BAC Information

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BAC

Clone NameMSMg01-173L04
Chromosome15 (Build37)
Map Location 56,622,356 - 56,622,674
singlet/doubletsinglet
Overlap genenone
Upstream geneSntb1, LOC665348, LOC100039908, Hba-ps3, Has2, EG594843, LOC435442
Downstream geneLOC100040067, LOC100039984, BC026439, Zhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173L04.T7 (MSMg01no173_l04.b1)MSMg01-173L04.TJ (MSMg01no173_l04.g1)
ACCAG369227AG369228
length720725
length of high quality
(start - end)
323 (44 - 366)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no173_l04.b1 PHD_FILE: MSMg01no173_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:25 2005CHROMAT_FILE: MSMg01no173_l04.g1 PHD_FILE: MSMg01no173_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCAATGGCTCAATCTCTTCATTGAGCTTGAAGCCTATGACCTAATC
AGTTGTTTCCCTCAGACTTAAAAACTGACAACAAGTCTATACACATGGAT
CTCTGGAGAATCTGAAAAATTTTAAAACAAATTTATTAGGTAGTTTGGCC
TGCTGTTTAATTCCACTGGATTCACAAGTAAGTGAAATTGTAATGTAAAT
GATATGAACAGGCCAAACAAGAGAAAATATTTATTCCCTATACATGAAGT
CTTTTCTGTTTTCCATCAAATAAGGATGAAACTTAATTCATGAATTATTA
GCATTGGTTTAACCTACACAACCCATGTAGGTATATGCACACCTATAGTT
ATTACATATATACACTGTCTGTGTACAGATAGAAATCACAGCATACATAT
TCATGTAAAATGTTTGAGTTCCTATTCACCAACACACTTACGTCTTCATC
TAGAAGCTTGATCTGATATTTGCTTTTCTTTCATTAAAAATTTATCAAGC
TGATCACGGTACCATCAACTCACATTTTTTTTTTTGTTTTAAAATTAGAT
GCATGAACAATTGGAAAGCTCAAAGAAAGGACCTGAAATTCTAAGTCATC
TTGACTGACTCACCAAGAGTGATTGGGCTGCTCGTTTTCCTACAGTGGGT
TTACAGGAATCTCTTAACCN
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTT
TAATAGGGTTATTTGTTTTTCTGGAGTCCAACATCTTGAGTTCTTTATAT
GTATTGAATATTAGCCCCCTATCGAATCTAGGATTGGTAAAGATCTTTTC
CCAATCTGTTGGTTGCCTTTTTGTCTTATTGACAGTGTCCTTTGCCATAC
AGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTACA
GCACAAGCCATTGGTGTTCTGTTCAGGAATTTTTCTCCTGTGCCCATATC
TTCGAGGTACATATTACCCAAGATACAATTTGCAAAACCCATGAAACTCA
AGAGGAAGACCAAAGTGTGGATACTTCGATCCTTCTTAGAAGGGGCAACA
AAATACCCATGAAAGGAGTTACAGAGACAAAGGTCAGAGCAGAGACTGAA
GGAATGACCATCCAGAGATTGCCCCACCTGGGGATCCATCCTATAAACAA
CCACAAAACCCAGACACTATTGCAGATGCTAACAAGAACTTGCTGACAGG
AGCCTGATATAGCAGTCTCTGAGAGGCTCTGCCATTGCCTGACAAATACA
GAAGTGGATGCTCACAACCGTCCTTTGGACAGAGCACAAGGTACCCAATG
AAGAAACTAGAGAAAGTACCCAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_l04.b1 MSMg01no173_l04.b1 CHROMAT_FILE:
MSMg01no173_l04.b1 PHD_FILE: MSMg01no173_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:25 2005
         (323 letters)



>mm_chr15_56622152_56622874
          Length = 723

 Score =  609 bits (315), Expect = e-179
 Identities = 318/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcaatggctcaatctcttcattgagcttgaagcctatgacctaatcagttgtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcaatggctcaatctcttcattgagcttgaagcctatgacctaatcagttgtt 264

                                                                       
Query: 65  tccctcagacttaaaaactgacaacaagtctatacacatggatctctggagaatctgaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccctcagacttaaaaactgacaacaagtctatacacatggatctctggagaatctgaaa 324

                                                                       
Query: 125 aattttaaaacaaatttattaggtagtttggcctgctgtttaattccactggattcacaa 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 aattttaaaacaaatttattaggtagtttggcctgccgtttaattccactggattcacaa 384

                                                                       
Query: 185 gtaagtgaaattgtaatgtaaatgatatgaacaggccaaacaagagaaaatatttattcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaagtgaaattgtaatgtaaatgatatgaacaggccaaacaagagaaaatatttattcc 444

                                                                       
Query: 245 ctatacatgaagtcttttctgttttccatcaaataaggatgaaacttaattcatgaatta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctatacatgaagtcttttctgttttccatcaaataaggatgaaacttaattcatgaatta 504

                              
Query: 305 ttagcattggtttaaccta 323
           |||||||||||||||||||
Sbjct: 505 ttagcattggtttaaccta 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)