BAC Information

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BAC

Clone NameMSMg01-173M18
Chromosome15 (Build37)
Map Location 80,679,609 - 80,859,940
singlet/doubletdoublet
Overlap geneTnrc6b, Adsl, LOC625672, Rutbc3, Mkl1
Upstream geneLOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981
Downstream geneLOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173M18.T7 (MSMg01no173_m18.b1)MSMg01-173M18.TJ (MSMg01no173_m18.g1)
ACCAG369297AG369298
length715725
length of high quality
(start - end)
259 (371 - 629)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no173_m18.b1 PHD_FILE: MSMg01no173_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:32 2005CHROMAT_FILE: MSMg01no173_m18.g1 PHD_FILE: MSMg01no173_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,679,609 - 80,679,866)(80,859,653 - 80,859,940)
sequence
XXXXXXXXXXXXXXXXXXXXXXACTGCCGAGGAGCCGCGGAATTCCATAT
GCTTTCTAGAAAAGTTTCAACCAGTGGTAACTGAGTGTAAAACTATAGTA
CAATATCATTTCCACGATTATGACACTGATACAACCCAAGAATCTTATCA
AGGTTCTCATTTTATTTGTATTTGTGTACATGTGCACATATGTAGTTCTA
CACAGTTCTGTCACATCTCCATCATTATTGAGACAGAGCATCTCTTTAAT
GTCATCTGCCTCACCCTCACCTGCAGCCTATGGCTGCCAACCACTTGGTC
TTTCAGAGATGTTATTTATAAGCCATGAGATAATACTTGAGACTGTATCT
GTTCTTTATCTGCCCACTACCCTATGGAGTTGTTTGCAAACTCTGTGACT
AGAAGAGCTGCCACTTAGCTCAAGTGTCTGAGTTGTCTTGGAGGCTACTG
ATGGCCAGTTACCCAGACCTTTAAGAAGATGATTCTCCCGAATATATGCA
GCAATTTCCTGTCTAATCGAACCTTGCTCATCAGTCTAAGCTGAGCTGTT
CATCATTTTACTCTAGTTACCACAGCCAAGATACTGATAGTCCTTCCTTT
TCTCTCCTTCATGGGTGATCTCTTAACTGGATTAACACAGTATGGCTGCA
CACGTGTCACCATATAGTACACAGCCTTTGGTATTGGCTTCGTCCTCCCT
GGCAGTATATCTAGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGAGACCACATCTGGGAAAACA
AAACCAAAAACAACAAACCCATTCTGCCCCAATCCCTGCCATATAAGCAA
GCATTCAGTGGGTATCAGTTTCTGTCTTGCTGGAGTGAGAGATGCCCTTA
GGTCAGTGGGTTCAGAATCTGTATCCACCATGGCCCTTTGACCTCTCACC
GTCATGCAGTGGTGGCAGCTGTCATTGGTACATAAAGATGAACCACCCCT
GTGTCAGGCTGTCTGTGCTGTGAGACATGCTTCCAGAAGCCGGGTTTGTC
ATTACCCCTGGGGTTGTTTAGGATACCACGCCCAGGTAGCCAGGGCTTAG
ACAATCATCTGTGTCTGCAGCCAGGCCCAGCCAGCCCGAGAGAATAAGCT
AGTGACTTGGCTAAGCCGTGCTTGTGGCAGCAGTGCATCCCATGAGACAG
TGGGTGCGTGCTTTTTGGGTTTTGTTCTTATTTATTAGTATGTTGGCAGG
GTCTCTCTACATAACCTTGACTATCCTGGAACTCATTGTAGACCAAGCTG
CCCTAGAACTCGTAGAGACCCTCCTGCCTCTGCCTCCCGAGTGCTGGGAT
AAAAGGTGTGCATCACCGCACTCAGCCTGATTCTTTCAAAATAGAGTTGG
TTGGGCAGTGTTGGCGCACACCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_m18.b1 MSMg01no173_m18.b1 CHROMAT_FILE:
MSMg01no173_m18.b1 PHD_FILE: MSMg01no173_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:32 2005
         (259 letters)



>mm_chr15_80679408_80680066
          Length = 659

 Score =  484 bits (250), Expect = e-141
 Identities = 256/258 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctatggagttgtttgcaaactctgtgactagaagagctgccacttagctcaagtgtctga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 202 ctatggagttgtttgcaaactctgtgactagaagagctgccacttagctcaggtgtctga 261

                                                                       
Query: 62  gttgtcttggaggctactgatggccagttacccagacctttaagaagatgattctcccga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gttgtcttggaggctactgatggccagttacccagacctttaagaagatgattctcccga 321

                                                                       
Query: 122 atatatgcagcaatttcctgtctaatcgaaccttgctcatcagtctaagctgagctgttc 181
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 322 atatatgcagcaatttcctgtctaatcgaaccttgctcattagtctaagctgagctgttc 381

                                                                       
Query: 182 atcattttactctagttaccacagccaagatactgatagtccttccttttctctccttca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atcattttactctagttaccacagccaagatactgatagtccttccttttctctccttca 441

                             
Query: 242 tgggtgatctcttaactg 259
           ||||||||||||||||||
Sbjct: 442 tgggtgatctcttaactg 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no173_m18.g1 MSMg01no173_m18.g1 CHROMAT_FILE:
MSMg01no173_m18.g1 PHD_FILE: MSMg01no173_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:32 2005
         (288 letters)



>mm_chr15_80859453_80860140
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgagaccacatctgggaaaacaaaaccaaaaacaacaaacccattctgccccaatccc 60
           ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 488 attgagaccacatctgggaaaacaaaaccaaaaacaacaaacccaatctgacccaatccc 429

                                                                       
Query: 61  tgccatataagcaagcattcagtgggtatcagtttctgtcttgctggagtgagagatgcc 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 428 tgccatataagcaagcattcagtgggtatcattttctgtcttgctggagtgagagatgcc 369

                                                                       
Query: 121 cttaggtcagtgggttcagaatctgtatccaccatggccctttgacctctcaccgtcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cttaggtcagtgggttcagaatctgtatccaccatggccctttgacctctcaccgtcatg 309

                                                                       
Query: 181 cagtggtggcagctgtcattggtacataaagatgaaccacccctgtgtcaggctgtctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cagtggtggcagctgtcattggtacataaagatgaaccacccctgtgtcaggctgtctgt 249

                                                           
Query: 241 gctgtgagacatgcttccagaagccgggtttgtcattacccctggggt 288
           |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 248 gctgtgagacatgcttccggaagccgggtttgtcattacccctggggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)