BAC Information

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BAC

Clone NameMSMg01-174B11
Chromosome15 (Build37)
Map Location 84,500,023 - 84,500,378
singlet/doubletsinglet
Overlap genenone
Upstream geneScube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l
Downstream geneArhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174B11.T7 (MSMg01no174_b11.b1)MSMg01-174B11.TJ (MSMg01no174_b11.g1)
ACCAG369496AG369497
length775725
length of high quality
(start - end)
117 (38 - 154)356 (367 - 722)
definitionCHROMAT_FILE: MSMg01no174_b11.b1 PHD_FILE: MSMg01no174_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:53 2005CHROMAT_FILE: MSMg01no174_b11.g1 PHD_FILE: MSMg01no174_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTC
TCAGATATAGTCTTCATATGATAAAATTACAGAAAATCAGAATAAGTCAG
TGGGTCCACGGGGGTGGGAGGAATCTGGGTAGGAGGTATATGTGTGGGTG
TGGCCATGACCTGCCACCAGGAATAGCGTTTGGTATCACGGATACATCAA
AGCCTAGTTCCTACCTGTGGCATCTTACTATAACTCTGCACGAGGCTACC
TCTTAGCCATTCGCCTCCAATACATCCATTGGATTTTGCCTGCCTTCCCT
CTTACTACCCCCCGTTCCTCCTCTTTTATCTACCACCATCCTCACACCCA
CGACCAATCTTTTTTTTTTTTCCCCCCCCCCCCCCCTCTTTTAATATTCC
CCTTACCTTTTTCCCCCCCTGCCCCCCTAACAAATCACAAAATACATACC
CCCCGCCCCCTTTACCATTCCCCTCCCTTTTTCCCTTTTCCCCCTTTTTT
CTCCTCCCCCCTTTTTCCCCCCCTTTTTTCCCCTCCCCTTCCTTTTCCCC
CCTCTTTTTCCCCCCCTTTTCCCTCTTTTCCCCCCTTTTCCCTTCCCCAT
CCTTCCCTCACCCCACATCCTTTTTCTCCCCCTCCCCCCTCCCCCCCCCA
CCCCCTTATTTCCCTCTCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTCCC
CCACCCCCACTTTTTTTCCCCACCCCCTTTTTTTTCCCTCCCCTCCCCCC
CTTCTTTTCTTCTTTCTTCCCCCCG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTCTCAAGCCTCTGGTCTACCGC
CTGGCAAGCCTACTTCATGCTGCCCCAGGGCCTTTCTGGAAAATGGAGCT
TTTCCAAATGCCCACTGAGGCCCATCCGGCCTCAGGGATATGAGGACATG
AAGGACACGAAGGAGTAATGAGCATCAGAGAGGTGGAGCAACCTACCCAA
GGTCACACAGCACAGAACGCACACATATGACAGAAGCTAGACTGCCGGCC
AGGGCAGACAGTTTTATGAATGGATGAGCAAAACGACTCAGCAGCCTGGG
CGCTCTCGTACTTCGCACAGCAGAACGAAGGTACCATCTGCCGCTGTTTT
TGTTGTTGCTGATTCAAACGTAAAGTCCCACACTGTCACACTAGGCTGGA
CCTAGGAATTGGTCTTTTTCTGAGTCAGACACTTCTCAGAGACAGACTTG
AGATCAGACAAATGGCAAATCTCCTCTGACCACCAGCTCCGGAGAGACCT
GACCCATGCTACCTCCACACAGACTCAGCGGCCCCATTCTAAAGAGGCAG
AAAACCTACCTTGCTCAGGAGCCAGAAGCTGCAGGGTGGGCGAGGGAAGG
GGTACCCTTGGCCTGTCTGCCTGTGACCTTGGCGGAGGCCTGCACAGTCC
AGAGCGGTTTGATGTTGGCTCAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_b11.g1 MSMg01no174_b11.g1 CHROMAT_FILE:
MSMg01no174_b11.g1 PHD_FILE: MSMg01no174_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:53 2005
         (356 letters)



>mm_chr15_84499823_84500578
          Length = 756

 Score =  681 bits (352), Expect = 0.0
 Identities = 355/356 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcagaacgaaggtaccatctgccgctgtttttgttgttgctgattcaaacgtaaagt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 acagcagaaggaaggtaccatctgccgctgtttttgttgttgctgattcaaacgtaaagt 497

                                                                       
Query: 61  cccacactgtcacactaggctggacctaggaattggtctttttctgagtcagacacttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cccacactgtcacactaggctggacctaggaattggtctttttctgagtcagacacttct 437

                                                                       
Query: 121 cagagacagacttgagatcagacaaatggcaaatctcctctgaccaccagctccggagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cagagacagacttgagatcagacaaatggcaaatctcctctgaccaccagctccggagag 377

                                                                       
Query: 181 acctgacccatgctacctccacacagactcagcggccccattctaaagaggcagaaaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 acctgacccatgctacctccacacagactcagcggccccattctaaagaggcagaaaacc 317

                                                                       
Query: 241 taccttgctcaggagccagaagctgcagggtgggcgagggaaggggtacccttggcctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 taccttgctcaggagccagaagctgcagggtgggcgagggaaggggtacccttggcctgt 257

                                                                   
Query: 301 ctgcctgtgaccttggcggaggcctgcacagtccagagcggtttgatgttggctca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctgcctgtgaccttggcggaggcctgcacagtccagagcggtttgatgttggctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)