BAC Information

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BAC

Clone NameMSMg01-175D06
Chromosome15 (Build37)
Map Location 98,161,413 - 98,161,737
singlet/doubletsinglet
Overlap genenone
Upstream geneBC038822, LOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285
Downstream geneOlfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175D06.T7 (MSMg01no175_d06.b1)MSMg01-175D06.TJ (MSMg01no175_d06.g1)
ACCAG370264AG370265
length668784
length of high quality
(start - end)
298 (41 - 338)131 (86 - 216)
definitionCHROMAT_FILE: MSMg01no175_d06.b1 PHD_FILE: MSMg01no175_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:14 2005CHROMAT_FILE: MSMg01no175_d06.g1 PHD_FILE: MSMg01no175_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCAAAACAGGATCCGCGGAATTCTCCTTTTCCGAACAGTTCCTCCCCTG
CAGGGTCATGGGCAGATAAGTCAGATTTAGCTTAAAAAAAAAAAAAAAAC
ATGTTGTGCTCCAGTTTGCCCTTGAATACAAAAATGCATCCCAGTTGGCT
GAAAAACTATATAAGTTTATGTGCTAAACAATAAAGCTAGATCTGCACTC
CATGCTGGTTTTTGGAGTCTGAATCCTGGCAATTTTATGGGCTCTGCCTC
TACTTCTCCCCCCACCCCCACTTCCTGGTCCCTGCTCCCACATTTCTCTT
TTTAAAAAACAATGATTTATTCCAGTGTTTTTTTATATTGCCCTTACTCC
ATATTTTTTAAATTAATTAACATATAGTTATGCGATTTATCCCCTTTATT
GCTCTAACCCCTTAAATTCTCCCCGTTCCATTGACCCATCTCTGCCCCTT
TCCAAGTGTACAACCTTTTACCCTTTGTTACTGTCACATCTATGTGAATA
GATATATAAATGCAGCCTGCTAAGTCTGTTTAGTGCTGCATGTATGCATA
TTTTTTACAACTGAACATTTGAGATTGGTCTACTTTTATTTCTGCTCCGG
CATTATTTATTCCTACCTACTAACTTCAAATTTGGTTCATTAACATTTTT
CACTTTATTTTTGTTTGT
CTTTTTTTACCATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGAGAAAATGTC
TCCGCAAGATTTGCTGTAAGGTATATTCATAGTCATTTATTGCGAAGGGT
TCATACTATGGTGGGTGGGGCCACCTCTGGGCTGGTGGTCCTGGGTTCTT
TAAGAAAGAGGGCTGAACAAGCCACGTGAAGCAAGCCAGTAAGCAGCACC
CTTGCCTGACCTCTGCATCAGCTCTTGCCCTCAGGTTCCTGTCTTGCTTG
AGTTCCAGCCCTGACTTCCTTCAGCGATGAATAGTGTTATGGAAGTGTAA
ACCCAAATAACCCCCTCTCCTATTTTTGTTTTTGCCCCTGGCGCTTTGCT
GCCTCCATACAAACACTAACTAAGACACTGGCATGCAAAAACAAGAACTC
GCAGGTTCTCTAAGCCCGTGCCTTTGGTGCTTCTGGAAGGCTAGGACTCC
ATGTTTCCTGGCGTTGCACCCCCTCACCCTGTAAATTTATTGGGGGAATC
CGTCCCACCGATTGTACGGCCCTCCCTGTACCCTCCCCCAAGCTTGTCTT
TCTAATTCCAGAGTGAGTCTCTCTCTTACCCCATCTTTCCACGTTTCTCC
AGGCCAAATACACACAATTCAATACGGCTACACGCGCCATACCAACCATC
CTTTCGGTAAATCCCTTTGTCTCCCACACTTTAATATGTCTCTCCTCCCC
CCTCCTTATGTCTTCGTGCATACACCTCTCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_d06.b1 MSMg01no175_d06.b1 CHROMAT_FILE:
MSMg01no175_d06.b1 PHD_FILE: MSMg01no175_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:14 2005
         (298 letters)



>mm_chr15_98161240_98161937
          Length = 698

 Score =  474 bits (245), Expect = e-138
 Identities = 292/325 (89%), Gaps = 27/325 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcccctgcagggtcatgggcagataagtcagatttagcttaaaaaaaaaaaaaaaa- 59
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 174 tcctcccctgcagggtcatgggcagataagtcagatttagctaaaaaaaaaaaaaaaaaa 233

                                                                       
Query: 60  --------------------------catgttgtgctccagtttgcccttgaatacaaaa 93
                                     ||||||||||||||||||||||||||||||||||
Sbjct: 234 aaaaaaaaaaaaaaaaaaaaaaaaaacatgttgtgctccagtttgcccttgaatacaaaa 293

                                                                       
Query: 94  atgcatcccagttggctgaaaaactatataagtttatgtgctaaacaataaagctagatc 153
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atgcatcccagttggctgaaaaactatataagtttatgtgctaaacaataaagctagatc 353

                                                                       
Query: 154 tgcactccatgctggtttttggagtctgaatcctggcaattttatgggctctgcctctac 213
           ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgcaccccatgctggttttgggggtctgaatcctggcaattttatgggctctgcctctac 413

                                                                       
Query: 214 ttctccccccacccccacttcctggtccctgctcccacatttctctttttaaaaaacaat 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttctccccccacccccacttcctggtccctgctcccacatttctctttttaaaaaacaat 473

                                    
Query: 274 gatttattccagtgtttttttatat 298
           |||||||||||||| | ||||||||
Sbjct: 474 gatttattccagtgatcttttatat 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)