BAC Information

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BAC

Clone NameMSMg01-176A23
Chromosome15 (Build37)
Map Location 44,832,747 - 44,833,071
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039309, Trhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950
Downstream geneKcnv1, LOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176A23.T7 (MSMg01no176_a23.b1)MSMg01-176A23.TJ (MSMg01no176_a23.g1)
ACCAG370870AG370871
length1,2591,083
length of high quality
(start - end)
325 (130 - 454)274 (129 - 402)
definitionCHROMAT_FILE: MSMg01no176_a23.b1 PHD_FILE: MSMg01no176_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:20 2005CHROMAT_FILE: MSMg01no176_a23.g1 PHD_FILE: MSMg01no176_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTCCANNTAACATCATTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCCTGGGATTTGTATACCCATTAAAGACCGAATTCTATCAAG
TTGTCTTCTGACCTCCCCCTAAGAGTCCTGGCACACACTCACATGCACAC
ACATAAGTAAAAGTAAGTACTTAAGTAAGTAAGGAAAGAAAGAAAGAAAG
ATTCCCTGCAGCTGACCCTCTTTCACCCACCACCAAATGTCATTGTAGGT
GCTTTCATAACTTGTCACTAAGTGATTGTGTTATCATTACACCAGCTTTC
CTGTAGACTGAAAGACAGGCTCCAAGTACTGTGTTTCTGTGGATATTGAA
CATCACAAATTAGAATGCCTTAGAGCATACCTTACAGTTCATAATGCATA
GGATAGATTTTTAAATTTATGCTCCTATGGGTGTTTGGGCAAAACCTGGT
TGAATAAGAAAGAACCTTGAGTAGACAGAGAGTAGCTGTGTTCTATTGTG
CCTCACGTTTTGCAATGCTCTGTATCTGGCTCTTAAAATGACATCTGATG
TTGTAAGCCATGTTCCTTTTTGAGCCTTATTCCATCTTCTACATGATACG
CTCTTCTGATGACTAGTCTAGATGTTCTTCCTCTGTGAAGTTAACTCCTG
CTCCTTACTACCCTACTACCTTCCCCCCTGCCTCCCTTATCCCTCACCCG
TTTCTCCTCCTTTTTCCCCTCTCTTTCTCCCCCTTATTTCCTTCATCCAT
CCTCCCTCCTCTCACACAATTTCCCTCTTCCCTTCCTTCTCTTTATCTTC
TCTCCTTCATTCTCATTTCCTTAACTTCACCCTTCTTTTTCTTTTCATCT
ACTTTCTTTCCTTCTTCCTCTTCCTTCTTCAATTATTTCCACTCCTTACT
TCCCTCCCACCTCTCACTCTCCTTTCTCTCTTCACTCCTCCTCTTCTCTT
TTACTTCTCTTTCTCCTTTTCCAATTACTCCCTTCCTCTACCTTTATCTC
TCTTCTTCTCCTTATCCCTCTTTCTTTCCCTCTCCCCTTCTTATTCCTTC
CCCTCCTTCCCCCCCCTTTTCTCTTCACCTCTTCACATCTTCCCCATTCC
TCCTCATCTTCCTTCCCTTCTCTTTCATACCTCTCCTTTTTCTTCCCTTT
CTCTATTCCTCTTTCTTTCCTTTTTTCTCTATTCTTTATTCTCCTCTCTT
TACTCCTCTTCCTCTCCATTGCACTTATCACTCTCTTTTCTTCCTTTCTC
TCCTCTTTG
CTTTGTTCTTTTTAACGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAATTACGTTTAAGACCTTGT
CATGCTTTGTGCATGCCTAACACCTTACCATTTGGGGGGCTGAAGCAGGG
GGATTACTAAGAAGCAGTGTGATGTTTTGTGACAAAACTGTTCCTAAGGC
TCTGCAAAAAAGGATATACAGATTATAAGAGCTATTATATCTGGAAGTTT
GTTGTGAGTCTGTGTCTGTGAATAACTTCAGAGGCTCCATTCAGGAAGTC
TCATCAATATGACGACCTGAACACGGACAACAGTAGACATGCCAAGGGGG
ATATGAGAGAAAGACCAAGAATCCTCAAACCTACATGAAGAACTACAGAC
AACATTTATATGCAACAAGCATAAAATATAGTCTTCCAAGGGAAGAGCAC
ACAACTTGTTTGTCTAATACTAAAAGGTCAACCCTGAAAACATACATACA
AGTAACATAATACTATCAACAAAGCAGGTTATATTAAGAAATGTATGAGT
GTGCATATACATGCATGCATGTAACAACAATTAATGAAAAAAGAGGCCAT
GAATTTGAAAGAGAGCAAGGGCTTATTGGAGGATTTGGAAGGAGGTCAGA
GAATGGGTAAATGATATAATCACCAAAAATAAAAGAAATAATTAAACCTA
ATCAAATTCACATTTCCATTCTTTATTACTGCAGAAAAGTACAAAACTGT
GGACCACAGAGCTAAGTAAAAAAATCCTTAACTGAGTTTCAACGGAAATG
TGGTCAGCCGATTTCTGTGTAATGAACTCAACAGAATATATTTTTATAAA
TCCGTGTTCTGTGTGCTTGAAACCAGATAATGATGTTAGATATTAAAAAA
ATATGGTTTAAACTCCTTTTCTTATTCCCATTTAACATTAATATTTTGAA
CCCTAAACTTTCCCCATAAACCCCCCCAAAAATTTATATGAAAATTTTGA
AGGCTTTTTATTTAACAAGGGCCCCAAATTCTATGGGGGAGTTTCCATCT
TTAAGGGAACATTTCTATCTCCCCCCCAAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_a23.b1 MSMg01no176_a23.b1 CHROMAT_FILE:
MSMg01no176_a23.b1 PHD_FILE: MSMg01no176_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:20 2005
         (325 letters)



>mm_chr15_44832547_44833271
          Length = 725

 Score =  576 bits (298), Expect = e-169
 Identities = 318/330 (96%), Gaps = 10/330 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcacacactcacatgcacacacataagtaaaagtaagtacttaagtaagtaaggaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcacacactcacatgcacacacataagtaaaagtaagtacttaagtaagtaaggaaaga 260

                                                                       
Query: 61  aagaaagaaagattccctgcagctgaccctctttcacccaccaccaaatgtcattgtagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaagaaagattccctgcagctgaccctctttcacccaccaccaaatgtcattgtagg 320

                                                                       
Query: 121 tgctttcataacttgtcactaagtgattgtgttatcattacaccagctttcctgtagact 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctttcataacatgtcactaagtgattgtgttatcattacaccagctttcctgtagact 380

                                                                       
Query: 181 gaaagacaggctccaagtactgtgtttctgtggatattgaacatcacaaattagaatgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaagacaggctccaagtactgtgtttctgtggatattgaacatcacaaattagaatgcc 440

                                                                       
Query: 241 ttagagcataccttacagttcataatgcataggatagatttttaaa-----tttatgctc 295
           ||||||||||||||||||||||||||||||||||||||     |||     |||||||||
Sbjct: 441 ttagagcataccttacagttcataatgcataggataga-----aaaacaaatttatgctc 495

                                         
Query: 296 ctatgggtgtttgggcaaaacctggttgaa 325
           ||||||||||||||| ||||||||||||||
Sbjct: 496 ctatgggtgtttgggtaaaacctggttgaa 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)