Query= MSMg01no176_c20.b1 MSMg01no176_c20.b1 CHROMAT_FILE:
MSMg01no176_c20.b1 PHD_FILE: MSMg01no176_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:37 2005
(724 letters)
>mm_chr15_99529710_99530833
Length = 1124
Score = 1319 bits (682), Expect = 0.0
Identities = 712/722 (98%)
Strand = Plus / Plus
Query: 1 tccacctacattctgctgcctccagtcaccctagccccctcctagtgaggggtggagggg 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tccacctacattctgctgcctccagtcaccaaagccccctcctagtgaggggtggagggg 260
Query: 61 atctctagggtctgaaatttggccccaaaccagagaatgtaccttaagggagagggctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctctagggtctgaaatttggccccaaaccagagaatgtaccttaagggagagggctgg 320
Query: 121 tgagggggcttccctagccttaagagatgctctcagccgggtgactccccatgagcccaa 180
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tgtgggggcttccctagccttaagagatgctctcagccgggtgactccccacgagcccaa 380
Query: 181 gtctccaggtaaggactccgtgcccagttactgctccctcaagcatacggaatctttacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctccaggtaaggactccgtgcccagttactgctccctcaagcatacggaatctttacg 440
Query: 241 gggcagaggatttcctgaagaagtagagattgggtctccgtgtggccctggtgctgtagg 300
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 441 gggcagaggatttcctgaagaagtagagattgggactccatgtggccctggtgctgtagg 500
Query: 301 ccacatcccaatatctgtaagtcttctccaccccaaagctgctggagagagatcccaaga 360
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacatcccaatatctgtaagtcacctccaccccaaagctgctggagagagatcccaaga 560
Query: 361 ggcagccctctgtgacatcccccagaagacctggctggttagcgcccggctcagggagag 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcaaccctctgtgacatcccccagaagacctggctggttagcgcccggctcagggagag 620
Query: 421 gggcacggccgcctgacctcactggcttctctctcagaggcctttgcagaaggccacatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggcacggccgcctgacctcactggcttctctctcagaggcctttgcagaaggccacatc 680
Query: 481 cataaattttcttatggaacaatcccaagtcctcttccccgacgtcattcgcttctctcg 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 cataaattttcttatggaacaatcccaagtcctcttccccgacgtcatccgcttctctcg 740
Query: 541 gcaacctcatctgcattttctatttctatatgatacagactctatattactataaccttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcaacctcatctgcattttctatttctatatgatacagactctatattactataaccttg 800
Query: 601 tatatactcccctccggccctgtttgtctccccctccattccctcttgtctccaagaacc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tatatactcccctccggccctgtttgtctccccctccattccctcttgtctccaagaacc 860
Query: 661 gccctcccgcccctagttctcccttctgtctctcccccattctcctgtctctgaatgcct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gccctcccgcccctagttctcccttctgtctctcccccattctcctgtctctgaatgcct 920
Query: 721 tt 722
||
Sbjct: 921 tt 922
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1124
Length adjustment: 10
Effective length of query: 714
Effective length of database: 1114
Effective search space: 795396
Effective search space used: 795396
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no176_c20.g1 MSMg01no176_c20.g1 CHROMAT_FILE:
MSMg01no176_c20.g1 PHD_FILE: MSMg01no176_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:37 2005
(632 letters)
>mm_chr15_99670324_99671361
Length = 1038
Score = 1152 bits (596), Expect = 0.0
Identities = 622/634 (98%), Gaps = 7/634 (1%)
Strand = Plus / Minus
Query: 1 tccagaggatgtgagttcaaatcccaacacccacatggcagttcacaattgtctgtattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tccagaggatgtgagttcaaatcccaacacccacatggcagttcacaattgtctgtattg 636
Query: 61 acctctgccaacaccaggcacacacatcatccacagacatatgtagacaaaaacacccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 acctctgccaacaccaggcacacacatcatccacagacatatgtagacaaaaacacccat 576
Query: 121 acatataaaataaaataaatttaaaaataaaaagaattccagaccag------cctcatc 174
||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 575 acatataaaataaaataaatttaaaaataaaaagaattccagaccagccagtacctcatc 516
Query: 175 cctctaggtagggctttcctcaacagtgcaggttggcctatcatgcccagcctcactaaa 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cctctaggtagggctttcctcaacagtgcaggttggcctatcatgcccagcctcactaaa 456
Query: 235 tctctaagactgagagttatgactcgcagtgaatgacagtgtttggtttgttactgattt 294
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 455 tctctaagactgagagttatgactcgcagtgaatgacagtgtttggtttgtaactgattt 396
Query: 295 gggcttgtctcttctcaagttagcatcagccagggcagctcacaggctggagtcagggct 354
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 395 gggcttgtctcttctcaagttagcatcagccagggcggctcacaggctggagtcagggct 336
Query: 355 ggagcacctccacgtggccagtccatgtgactgtttggcttggtggctgggttccaaagg 414
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ggagcacctccacatggccagtccatgtgactgtttggcttggtggctgggttccaaagg 276
Query: 415 caaaagtctggagaggagggcgtgcaaaaggggaggagccagaagctctatgcctgctcc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 275 caaaagtctggagaggagggcgtgcaaaaggggaggagccagaagctctatgcttgctcc 216
Query: 475 tgaccttggtcttggaagccatacacttttcagtggccttatcctcagatgtgaatcaga 534
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 215 tgaccttggtcttggaagccatacactttttagtggccttatcctcagatgtgaatcaga 156
Query: 535 aggctggctcctattctggagaagggggtggaatttggctccaccttctggtgggaggaa 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aggctggctcctattctggagaagggggtggaatttggctccaccttctggtgggaggaa 96
Query: 595 tgtcaaagatattttgaatctttttttttttttt 628
||||||||||||||||||| ||||||||||||||
Sbjct: 95 tgtcaaagatattttgaat-tttttttttttttt 63
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1038
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1028
Effective search space: 639416
Effective search space used: 639416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
