Query= MSMg01no176_f05.b1 MSMg01no176_f05.b1 CHROMAT_FILE:
MSMg01no176_f05.b1 PHD_FILE: MSMg01no176_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:56 2005
(241 letters)
>mm_chr15_27675326_27675961
Length = 636
Score = 360 bits (186), Expect = e-104
Identities = 222/238 (93%), Gaps = 11/238 (4%)
Strand = Plus / Minus
Query: 1 ggccccgagctgactgagtgaccctgtc--ccttgggccactgatagactttccctccta 58
|||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |
Sbjct: 430 ggccccgagctgactgggtgaccctgtcggc--tgggccactgatagactttccctccca 373
Query: 59 tcaccatgagcacgcattagagtcagccagagccccgcctccctgtcactggctgggtgg 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ccaccatgagcacgcattagagtcagccagagccccgcctccctgtcactggctgggtgg 313
Query: 119 cctgtgcacacttatcaccctactctgggggtgggggtgtgtgtgtgcagatagataga- 177
||||||||||||||||||||||||||||||| ||||| | | |||||||||||||
Sbjct: 312 cctgtgcacacttatcaccctactctggggggggggggg-g-----gcagatagatagat 259
Query: 178 ggccatgctctacgaatagcatggaggttgtgggaattgaggaaggcccatttgaaat 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggccatgctctacgaatagcatggaggttgtgggaattgaggaaggcccatttgaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 636
Length adjustment: 9
Effective length of query: 232
Effective length of database: 627
Effective search space: 145464
Effective search space used: 145464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no176_f05.g1 MSMg01no176_f05.g1 CHROMAT_FILE:
MSMg01no176_f05.g1 PHD_FILE: MSMg01no176_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:56 2005
(387 letters)
>mm_chr15_27505252_27506038
Length = 787
Score = 665 bits (344), Expect = 0.0
Identities = 374/384 (97%)
Strand = Plus / Plus
Query: 1 cagaccctgtgaaagtcagacacttagaaagcaaggatcacggggaagagacagtggaga 60
||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 201 cagaccccatgaaagtcagacacttagaaagcaaggatcatggggaggagacagtggaga 260
Query: 61 gggtaagacagtgagagggaggaacggtcgatttgtcagagacgggaggttgccatggga 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gggtaagatggtgagagggaggaacggtcgatttgtcagagacgggaggttgccacggga 320
Query: 121 agacggacagaatgacagaggtataggtgtgcataaaacagcagggtgaggagcccccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacggacagaatgacagaggtataggtgtgcataaaacagcagggtgaggagcccccaa 380
Query: 181 accagaaagctctcccccactccctgggatgctgtgagcctttccagtacaggttgtgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accagaaagctctcccccactccctgggatgctgtgagcctttccagtacaggttgtgaa 440
Query: 241 catcagaagaatttctgcagatgtataatttagaaaccagtaaattagacataatgtttt 300
| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 cgtcagatgaatttctgcagatgtatagtttagaaaccagtaaattagacataatgtttt 500
Query: 301 ttggctaaggttgggttttggtgagctgacccatgttaagaatgcaagtgtggaatgcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggctaaggttgggttttggtgagctgacccatgttaagaatgcaagtgtggaatgcaa 560
Query: 361 aggcacttgggtcatgccaagttt 384
||||||||||||||||||||||||
Sbjct: 561 aggcacttgggtcatgccaagttt 584
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
