BAC Information

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BAC

Clone NameMSMg01-177F21
Chromosome15 (Build37)
Map Location 66,774,467 - 66,774,962
singlet/doubletsinglet
Overlap geneNdrg1
Upstream geneF930104E18Rik, Kcnq3, Lrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1
Downstream geneLOC100040667, St3gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177F21.T7 (MSMg01no177_f21.b1)MSMg01-177F21.TJ (MSMg01no177_f21.g1)
ACCAG371777AG371778
length832706
length of high quality
(start - end)
498 (173 - 670)---
definitionCHROMAT_FILE: MSMg01no177_f21.b1 PHD_FILE: MSMg01no177_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:56 2005CHROMAT_FILE: MSMg01no177_f21.g1 PHD_FILE: MSMg01no177_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAAAAGAAAAAAACAAAAAAAAAAAATGGAAAGTAATAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGGGAGGGAACTGGACAGGCGATGCAA
AGAAGACAGGGGGGCGCGTGAAAAGAGGTCTATAAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCGCGGAATTCCAGGATTCGCGCCACAGGG
TATCTCTGTGCCCTTCTCACTTAGTTGTGGCTTGGCTATTGCACACTGGG
CATTCTTTCTTTTTCTATGGCTTCTTCCTCCTGCTCTCTTGAGGGCCTAG
TCCAGTTTTGAATGGAATCTCAGTTCTGCATGGACTATGCAGGAGCCATT
AACATCTGCTCTCAGGTCCCCACAGTTGCTAACATAGCCCTCAGTATATG
TCATGTTGTGTCTCTGATTACAGCTCAACAACCCTGAGATGGTAGAGGGT
CTCGTGCTCATGAATGTGAACCCCTGTGCTGNACGCTGGATGGACTGGGC
TGCCTCTAAGGTAAGGGCGGACAGAGAAGATTGGTGGGGACCCAGCCTCT
ACTCAGGGTAGCACCTTCTTGCCCCCACCCCCGCCTCTTTCCTTACTGTC
CAAGAGAGTACCCTTCCTCAGCCCTTTTTAGGCTAGCAACCATTTGCTGC
TCTCAAAGGTCTTAGAGGTTACGCCCTGAATGCTGTCCCAAGGAACCCTG
TTGATCCTGTTGATTTTTTTTTCCTAAGTGAGGATTGCATTCTTTTTTTC
TGAAGAGCCCCCATTGTCTGACAAGGATAGGGGAAAAATTTCTGATAAAA
GGCACACTGGCTAATGTGAAAAGTCCACATAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGTCTTGAGATTCATAGGGCA
TAACCTCCTGTCCTGAGCTTTTTGTCAGCCAGGCCTTCTTATGAAGCCTC
ATGAATTCAGGCCAAGCCTGATTCGAGTCAATTATGAGTAGCTTTGACCT
GGTCTCTTCTCCCTCATTCAAATGGGTATGTGAAGAAGGATGAAGTAGAA
TCACATCTGACAACAGAGGAAGCTTTTCAGGTGGATACAATTGTGCGACT
ATCTGGAGTATACCCTGTTACAGGCCGGAGAAATTTTTCTAAGCCAGCAA
TCAGAGGTGAGACCCCTGAACCTCCTTCGCAGATGCAGTCTCTTGCCCAC
GTAGTGCAAAAAGAAAACCCCTTACTTTATGTCCATTAGTATTTTAAAAG
TAAAAGCTCATGCTCAAGTCTTTTGAGGATTGTTGTCATTAGACTTGCTC
TTGCATAAAGGCCCTTCTGCCCCAGAGTGTATGCCTAATAGTCAGAGAGA
GAGCAACGTAGGCAGGGAGTCAGCGTGTTCCACATATTGCTGTTAATTCT
CGAGGACTTATACTTAACCAAATTTTGCAAACCGATACTCATTTTTTAAC
TTTAGAAAATCAAATATGCCCTTGTGACTATTGATACCTTCTTAGTCTTC
CCAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_f21.b1 MSMg01no177_f21.b1 CHROMAT_FILE:
MSMg01no177_f21.b1 PHD_FILE: MSMg01no177_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:56 2005
         (498 letters)



>mm_chr15_66774265_66775162
          Length = 898

 Score =  922 bits (477), Expect = 0.0
 Identities = 491/496 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattccaggattcgcgccacagggtatctctgtgcccttctcacttagttgtggcttg 62
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ggaattccaggaatcgagccacagggtatctctgtgcccttctcacttagttgtggcttg 639

                                                                       
Query: 63  gctattgcacactgggcattctttctttttctatggcttcttcctcctgctctcttgagg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gctattgcacactgggcattctttctttttctatggcttcttcctcctgctctcttgagg 579

                                                                       
Query: 123 gcctagtccagttttgaatggaatctcagttctgcatggactatgcaggagccattaaca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gcctagtccagttttgaatggaatctcagttctgcatggactatgcaggagccattaaca 519

                                                                       
Query: 183 tctgctctcaggtccccacagttgctaacatagccctcagtatatgtcatgttgtgtctc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tctgctctcaggtccccacagttgctaacatagccctcagtatatgtcatgttgtgtctc 459

                                                                       
Query: 243 tgattacagctcaacaaccctgagatggtagagggtctcgtgctcatgaatgtgaacccc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tgattacagctcaacaaccctgagatggtagagggtctcgtgctcatgaatgtgaacccc 399

                                                                       
Query: 303 tgtgctgnacgctggatggactgggctgcctctaaggtaagggcggacagagaagattgg 362
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgtgctgaaggctggatggactgggctgcctctaaggtaagggcggacagagaagattgg 339

                                                                       
Query: 363 tggggacccagcctctactcagggtagcaccttcttgcccccacccccgcctctttcctt 422
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tggggtcccagcctctactcagggtagcaccttcttgcccccacccccgcctctttcctt 279

                                                                       
Query: 423 actgtccaagagagtacccttcctcagccctttttaggctagcaaccatttgctgctctc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 actgtccaagagagtacccttcctcagccctttttaggctagcaaccatttgctgctctc 219

                           
Query: 483 aaaggtcttagaggtt 498
           ||||||||||||||||
Sbjct: 218 aaaggtcttagaggtt 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)