BAC Information

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BAC

Clone NameMSMg01-177H01
Chromosome15 (Build37)
Map Location 34,444,324 - 34,444,801
singlet/doubletsinglet
Overlap genePop1
Upstream genePgcp, Tspyl5, LOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12
Downstream geneNpal2, Kcns2, Stk3, Osr2, Vps13b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177H01.T7 (MSMg01no177_h01.b1)MSMg01-177H01.TJ (MSMg01no177_h01.g1)
ACCAG371829AG371830
length683691
length of high quality
(start - end)
63 (445 - 507)480 (57 - 536)
definitionCHROMAT_FILE: MSMg01no177_h01.b1 PHD_FILE: MSMg01no177_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:01 2005CHROMAT_FILE: MSMg01no177_h01.g1 PHD_FILE: MSMg01no177_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCTATCGGGAGAGGATCCGCGGAATTCTTGATCCCCACACTGACGGAT
GAACCAAAGTTAGCCTTAACATACTGTATGAACTCTGATGGACCTGATTT
GTTACTGTATATTGATAAAATGGAACATATTTGTGTTTGTGGAGGACTCA
TATGACAATCGAAAATATATGTTACTGGAGCACCGAATATATGGGAGAGC
TTGGCGGTTTCCACTCAATTATCCTTATGATCCTAATACTTCTAAAAATA
CATTTTATTTAATATTTAATCACAATGACTAATTGAACAATATACTAGCC
AAGCTGAACTACACAATATCCTATTATAGTACCTGCAACATATAATGTAC
CAGAGAACAAATTGCAGTTAAAATAAAGGCAAGCATTAGTAATGCTGCAG
AGGATGAGATTATTGATAAAGTATAAAGCGTGTATCACGAGCATATGACT
CCATGGGAAAACTGGGTTACTCATTGCCACTCCGGAAAGCAGTCTGGCAG
TTTCTGGCCAAGCTAAAGATGGACTTACCACACAGCTTACCCCTTACTTT
TTTGGGCATTTATCCCCGAGAAATTAAGACTTATTTCATGAATAATTTAT
ACATGAACATTAATAGCAGCTTTATTTGTACCAGCTCTAAACTGGGAACT
TTTCAACCGTCTCTCACCAAGTGAGCGCCTAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTCTGGTTTGCAACTCAGTTCTGCCCCTCAGATTCGTGTGAGC
TCCTTAGGGCAACATTCTGGATTCGTCGAGGCTGTTGGGAATGGGACTGG
GCCTTCGTGGACAGTGTGGCCGTCACTGGCACTCAGCACTACACCTATGA
GCTCTCTGGTTAGTCTCCACGAGGTTAGACCTCTTCCACGAGGTTAGACC
TTCCCTGTCCATGAGGTTAGACCTTTTCCTCAAGGTTTGACCTCATCCAT
GAGGGTTAGACCTCTTCTACAAGGTTAGACCTCTTCCACGCAGTAGGATC
GTTTGCAGATGCCAGTACTGCTCTGCAGCTTTCTTCTCGGGTCTGTTCAG
TTAAATTTTCTCTGGCTTTGATCTCCCCTGAGATCTGTCACACCTTGCCC
TAGTTACTTCCCCAGCCAGCAGCTCTATACAGGTATGCACCTTTTTTTTT
TTTTTTTTTTAAGATTTATTTATTGTGTATAAGTACACTGTAGCTGTCTT
CAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCC
ACCATGTGATTGCTGCGAATTGAACTCATGACCTCTTAACCACTGAGCCA
TCTCTCCAGCTCAGGTATCACTTTTGAGTGAATTTCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_h01.g1 MSMg01no177_h01.g1 CHROMAT_FILE:
MSMg01no177_h01.g1 PHD_FILE: MSMg01no177_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:01 2005
         (480 letters)



>mm_chr15_34444124_34445003
          Length = 880

 Score =  878 bits (454), Expect = 0.0
 Identities = 473/480 (98%), Gaps = 2/480 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctggtttgcaactcagttctgcccctcagattcgtgtgagctccttagggcaacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctggtttgcaactcagttctgcccctcagattcgtgtgagctccttagggcaacatt 260

                                                                       
Query: 61  ctggattcgtcgaggctgttgggaatgggactgggccttcgtggacagtgtggccgtcac 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ctggattcgtcgaggctgttgggaatgggactgggccttcgtgggcagtgtggccgtcac 320

                                                                       
Query: 121 tggcactcagcactacacctatgagctctctggttagtctccacgaggttagacctcttc 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcactcagcactacacctatgagctctctggttagtctccacgaggttagacctcttc 380

                                                                       
Query: 181 cacgaggttagaccttccctgtccatgaggttagaccttttcctcaaggtttgacctcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacgaggttagaccttccctgtccatgaggttagaccttttcctcaaggtttgacctcat 440

                                                                       
Query: 241 ccatgagggttagacctcttctacaaggttagacctcttccacgcagtaggatcgtttgc 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 441 ccatgagggttagacctcttctacaaggttagacctcttccacgaagtaggatagtttgc 500

                                                                       
Query: 301 agatgccagtactgctctgcagctttcttctcgggtctgttcagttaaattttctctggc 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatgccagtgctgctctgcagctttcttctcgggtctgttcagttaaattttctctggc 560

                                                                       
Query: 361 tttgatctcccctgagatctgtcacaccttgccctagttacttccccagccagcagctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgatctcccctgagatctgtcacaccttgccctagttacttccccagccagcagctct 620

                                                                       
Query: 421 atacaggtatgcacctttttttttttttttttttaagatttatttattgtgtataagtac 480
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 621 atacaggtatgcaccttttttttttttttttt--aagatttatttattgtgtataagtac 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)