BAC Information

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BAC

Clone NameMSMg01-177J10
Chromosome15 (Build37)
Map Location 19,388,014 - 19,388,307
singlet/doubletsinglet
Overlap geneEG666875
Upstream geneLOC666839, Cdh10, EG666857
Downstream geneLOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177J10.T7 (MSMg01no177_j10.b1)MSMg01-177J10.TJ (MSMg01no177_j10.g1)
ACCAG371933AG371934
length743740
length of high quality
(start - end)
327 (46 - 372)296 (77 - 372)
definitionCHROMAT_FILE: MSMg01no177_j10.b1 PHD_FILE: MSMg01no177_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:11 2005CHROMAT_FILE: MSMg01no177_j10.g1 PHD_FILE: MSMg01no177_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACATGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAAATG
TTCAGCATCCTTAATCATCAGGGAAATGCATATCAAAACAACCCTGAGAT
TCCACCTCATACCATTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCCAGGGTGTGGAGAAAGAGGAACACTTCTCCATTGTTGGTG
GGATTGCAAGCTTGTTCAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCTAGCAATACCTTTCCTGGGC
ATATATCCCGAAGATTTTCCCACAGCCAAGAAGGACACATGCTCTACTAT
GTTCATAGCAGCCTTATTTATAGTAGCCAGAAGCTGAAAAGAACCCAGAT
GTCCCTCAACAGAGTAATGGATGTAGAAAATGTGGTAATTTACACAATGG
AGTACTACTCAGCTATTCAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATTACAAAA
GAACTCATATGATATGTACTCACTCAAAAGTGGATATTAGCCCAGAAACT
TAGAATGCCCAAGATGTAAGATACAATTTGAAAAACACATGAAACTCAAG
AAGAATGAAGACCGAAGTGTGGACACTTTACCCCTTCTTAGAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCAAATATAATTTAATTAAATT
TGTTTACTTATTTAAAATTCAAATGCTAAATACAGTTAAGTTTTTGTGTA
GGTTCCTTGAAATTGATTTTTACAGACTATCCTATAAGATCAGTTCCTAG
AATAATAACTACAGTTATTGGACATTAAATGTATATATCTAATAATTACT
CAAATTATAATATTTTGTTTTGATGTGGCTCATATTCCTTTTGTACTTTT
TCTCTGTTAGTTTCACTCAGTTAACTTCTCTGCATCTTTATTTCTTATTC
ATCCTAAATATTATGTTTTATATATGACAACACTATTTTGGATTATTGCA
TTCTGAATACTTTTTAAACAAATGAGGTATTTGTCATATTCATATTTTAT
ATATGTAGAAAATAAAAATCATAGAAGTCAATAAACCTCCCCATTGCTAC
GCAGGTAGAAATTTCTTTAGGTTGCATGCATAACTTCACTGCTCTCCACT
TTTTGACCTGAATATAATTTGACGAGAGCCTAAAAGTTCCTAGGGATTTG
GATTTCCTCCAGGAGCTATCACACTCCTTATCTTCCCTTTAGCATGTGTT
CACATGACAGTAGTAATTACTTCTCTAAATCTCTGCACATATCATAATAG
TGTAAAACATTATAATCTTCCCAAGGATATTAGTAACACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_j10.g1 MSMg01no177_j10.g1 CHROMAT_FILE:
MSMg01no177_j10.g1 PHD_FILE: MSMg01no177_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:11 2005
         (296 letters)



>mm_chr15_19387771_19388466
          Length = 696

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcaaatataatttaattaaatttgtttacttatttaaaattcaaatgctaaatacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 catcaaatataatttaattaaatttgtttacttatttaaaattcaaatgctaaatacagt 478

                                                                       
Query: 61  taagtttttgtgtaggttccttgaaattgatttttacagactatcctataagatcagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 taagtttttgtgtaggttccttgaaattgatttttacagactatcctataagatcagttc 418

                                                                       
Query: 121 ctagaataataactacagttattggacattaaatgtatatatctaataattactcaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctagaataataactacagttattggacattaaatgtatatatctaataattactcaaatt 358

                                                                       
Query: 181 ataatattttgttttgatgtggctcatattccttttgtactttttctctgttagtttcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 357 ataatattttgttttgatgtggctcatattccttttgtactttttctctattagtttcac 298

                                                                 
Query: 241 tcagttaacttctctgcatctttatttcttattcatcctaaatattatgtttta 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tcagttaacttctctgcatctttatttcttattcatcctaaatattatgtttta 244


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)