Query= MSMg01no178_d18.b1 MSMg01no178_d18.b1 CHROMAT_FILE:
MSMg01no178_d18.b1 PHD_FILE: MSMg01no178_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:59 2005
(687 letters)
>mm_chr15_96151328_96152413
Length = 1086
Score = 835 bits (432), Expect = 0.0
Identities = 444/448 (99%), Gaps = 1/448 (0%)
Strand = Plus / Plus
Query: 240 atgtgttaaattcttagtccttggttgttgatactatttggaaagtggtaaaagtttagt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgtgttaaattcttagtccttggttgttgatactatttggaaagtggtaaaagtttagt 499
Query: 300 tggtgaggcctctgaacgaactaggttactggagatgtgactttgaaggctatagctagt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggtgaggcctctgaacgaactaggttactggagatgtgactttgaaggctatagctagt 559
Query: 360 cccaagtctcttcttaaagatccgcgccagaattaatataataaaagagagaaaatgata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cccaagtctcttcttaaagatccgcgccagaattaatataataaaagagagaaaatgata 619
Query: 420 ggaggctgatgatagagcttactcagggtccttcctgtcttgggtgtcactttattgaca 479
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggaggctgaggatagagattactcagggtccttcctgtcttgggtgtcactttattgaca 679
Query: 480 tgtagcagacaagcttatccttttaaaggatgctgttgttaaccaatattgttagacagt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtagcagacaagcttatccttttaaaggatgctgttgttaaccaatattgttagacagt 739
Query: 540 aaattggttaaaaaaaaatctatcgctactatgtttctcataatttacttctaatgaatg 599
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaattggttaaaaaaaaa-ctatcgctactatgtttctcataatttacttctaatgaatg 798
Query: 600 atattttggtagacaaaaagggatttatttacagatatttgaatatgtaaatatatttca 659
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 799 atattttggtagacaaaaagggattcatttacagatatttgaatatgtaaatatatttca 858
Query: 660 tttctaacttgatttaacaccccctctc 687
||||||||||||||||||||||||||||
Sbjct: 859 tttctaacttgatttaacaccccctctc 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1086
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1076
Effective search space: 728452
Effective search space used: 728452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_d18.g1 MSMg01no178_d18.g1 CHROMAT_FILE:
MSMg01no178_d18.g1 PHD_FILE: MSMg01no178_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:59 2005
(666 letters)
>mm_chr15_96260628_96261693
Length = 1066
Score = 1234 bits (638), Expect = 0.0
Identities = 659/666 (98%)
Strand = Plus / Minus
Query: 1 tcagtaaacctgtagcttggttgtcagttcacttccactggccagctgctaaccccttgg 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tcagtaaacctgcagcttggttgtcagttcacttccactggccagctgctaaccccttgg 704
Query: 61 gcacctcctgtctgtacctcctcagctctggaactacagtcatccacttccatactcact 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gcgcctcctgtctgtacctcctcagctctggaactacagtcatccacttccatactcact 644
Query: 121 ttttatggggcttctagggctccgaatgcaagtttctatgcttgcccagcagacacttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttttatggggcttctagggctccgaatgcaagtttctatgcttgcccagcagacacttta 584
Query: 181 ctacctgggctcgctctccaactcctttcaggcatttcttaaggacatgctatctctttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctacctgggctcgctctccaactcctttcaggcatttcttaaggacatgctatctctttt 524
Query: 241 taattacaaatttgttgtttggtattagtcagactttgaatgcctgcttaacattaagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 taattacaaatttgttgtttggtattagtcagactttgaatgcctgcttaacattaagct 464
Query: 301 cagagtatttattatcttaattgatgttgaatacaagagtttttcctacacttgcccagg 360
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 463 cagagtatttattatcttaattgatgttgtatacaagagtttttcctacacttgcccaga 404
Query: 361 ggtgcttgggattgaaccccaggaactctcatagtcaggatgagcgagcgctttaccact 420
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 403 ggtgcttgggattgaaccccaggaactcttatagtcaggatgaacgagcgctttaccact 344
Query: 421 gaactgtaccttcgtccatagaaagatgttttcatcaaatgtctttgggattagtgttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gaactgtaccttcgtccatagaaagatgttttcatcaaatgtctttgggattagtgttta 284
Query: 481 ctgaaatgtgtttgggagatataatgggactatcttggacctgccagcgatataaataat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctgaaatgtgtttgggagatataatgggactatcttggacctgccagcgatataaataat 224
Query: 541 gacaatgaggcttattaatattttaaagcttaggcctttcattgggtggtcttctgacta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gacaatgaggcttattaatattttaaagcttaggcctttcattgggtggtcttctgacta 164
Query: 601 ctctaacctgactaattctgcactacatcctgccatgtggccagacctacctctcctttg 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 163 ctctaacctgactaattctgcactacatcctgccatgtggccaggcctacctctcctttg 104
Query: 661 gtcttg 666
||||||
Sbjct: 103 gtcttg 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
