BAC Information

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BAC

Clone NameMSMg01-178D20
Chromosome15 (Build37)
Map Location 93,439,062 - 93,439,746
singlet/doubletsinglet
Overlap genenone
Upstream genePdzrn4, LOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1
Downstream geneZfp42-ps1, LOC100042627, LOC100042631, D630010B17Rik, Adamts20, Pus7l, Irak4, Twf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178D20.T7 (MSMg01no178_d20.b1)MSMg01-178D20.TJ (MSMg01no178_d20.g1)
ACCAG372387AG372388
length738744
length of high quality
(start - end)		689 (46 - 734)666 (77 - 742)
definitionCHROMAT_FILE: MSMg01no178_d20.b1 PHD_FILE: MSMg01no178_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:59 2005CHROMAT_FILE: MSMg01no178_d20.g1 PHD_FILE: MSMg01no178_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACATCTTTCTCTGAAGGCTGCTAGCAGAATACTGACTTCCAGGC
AGCTAGGACAAGGGTATTAAAGCCCATACCCACAGTGACACACCTACTTC
AACAAGGCCACACCTCCTAATAGTGCCACTCCCTAGGCCAAGCATATACA
AACCATCACAGCCTCCTAGGTCCCCAGTGCTGTAGTTGGTGCTGGGGATT
CAGTAACTCTCAATGAAGACTCTTCAAGTATTTGGCAATTGCAGTAGAGC
AACAATAGTGCTGTATTCTGTATCTGCCGGACTTAATATGGTAACAAGTA
GTCTTAGTTAGGATTTTACTGCTGTGAACAGACACCATGACTAAGGCAAC
TCTTATAAGGACATTTTCCTGAGGTTGGCTTACAGATTCAGAGGTTCAGT
CCATAATCATCAAGGAGGAAGCATGGCAGCATCCAGGCAGGCATGGTGCA
GGAGGAGTTGAGAGTTCTACATCTTCATCTGAAGGTCACTAGGAGAAGAC
AGTCTTCCATGTGGTTAGGACAGAGGGTCTCAAAGTCCACCCCCACAGTG
ACACACTTCCTCCAACAAGGCCCTACCTACTCCAATAAGGCCAATACCTA
CTCCAACAAGGTTATATTTCCTAATAATGTTACTTCCTGGGCAAAGCATG
CTCAAACCACCATGCAAGTATCTGCTCTCTTATCACAN

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
GAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACTTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGAGAGGATGTCAAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTCCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGTAAG
AAGAACACTAAGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGGCAAATGGATGGACCCGGAGGGCATCATCCTAA
ATGAGGTAACCCAATCACAAAAGAACTCACATGATATGTACTCACTGATA
AGTGGATATTTGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTT
GCAAAACACATGAAACTCAAGAAGAATGAAGACCAAAGTGTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_d20.b1 MSMg01no178_d20.b1 CHROMAT_FILE:
MSMg01no178_d20.b1 PHD_FILE: MSMg01no178_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:59 2005
         (689 letters)



>mm_chr15_93438858_93439946
          Length = 1089

 Score = 1270 bits (657), Expect = 0.0
 Identities = 678/685 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacatctttctctgaaggctgctagcagaatactgacttccaggcagctaggac 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacatctttatctgaaggctgctagcagaatactgacttccaggcagctaggac 264

                                                                       
Query: 65  aagggtattaaagcccatacccacagtgacacacctacttcaacaaggccacacctccta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagggtattaaagcccatacccacagtgacacacctacttcaacaaggccacacctccta 324

                                                                       
Query: 125 atagtgccactccctaggccaagcatatacaaaccatcacagcctcctaggtccccagtg 184
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atagtgccactccctaggctaagcatatacaaaccatcacagcctcctaggtccccagtg 384

                                                                       
Query: 185 ctgtagttggtgctggggattcagtaactctcaatgaagactcttcaagtatttggcaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtagttggtgctggggattcagtaactctcaatgaagactcttcaagtatttggcaat 444

                                                                       
Query: 245 tgcagtagagcaacaatagtgctgtattctgtatctgccggacttaatatggtaacaagt 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 tgcagtagagcaacaatagtgctgtattctgtagctgccggacttaatatggtaacaagt 504

                                                                       
Query: 305 agtcttagttaggattttactgctgtgaacagacaccatgactaaggcaactcttataag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtcttagttaggattttactgctgtgaacagacaccatgactaaggcaactcttataag 564

                                                                       
Query: 365 gacattttcctgaggttggcttacagattcagaggttcagtccataatcatcaaggagga 424
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacattttcttgaggttggcttacagattcagaggttcagtccataatcatcaaggagga 624

                                                                       
Query: 425 agcatggcagcatccaggcaggcatggtgcaggaggagttgagagttctacatcttcatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcatggcagcatccaggcaggcatggtgcaggaggagttgagagttctacatcttcatc 684

                                                                       
Query: 485 tgaaggtcactaggagaagacagtcttccatgtggttaggacagagggtctcaaagtcca 544
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgaaggtcactaggagaagacggtcttccatgtggttaggacagagggtctcaaagtcca 744

                                                                       
Query: 545 cccccacagtgacacacttcctccaacaaggccctacctactccaataaggccaatacct 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 745 cccccacagtgacacacttcctccaacaaggccctacctactccaataaggctaatacct 804

                                                                       
Query: 605 actccaacaaggttatatttcctaataatgttacttcctgggcaaagcatgctcaaacca 664
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 805 actccaacaaggttatatttcctaataatgttacttcttgggcaaagcatgctcaaacca 864

                                    
Query: 665 ccatgcaagtatctgctctcttatc 689
           |||||||||||||||||||||||||
Sbjct: 865 ccatgcaagtatctgctctcttatc 889



 Score =  207 bits (107), Expect = 2e-57
 Identities = 229/273 (83%), Gaps = 14/273 (5%)
 Strand = Plus / Plus

                                                                       
Query: 313 ttaggattttactgctgtgaacagacaccatgactaaggcaactcttataaggaca---t 369
           ||||| ||||||| |||||| ||||||||||||| |||||||||||||||||||||   |
Sbjct: 48  ttagggttttacttctgtgagcagacaccatgaccaaggcaactcttataaggacaacat 107

                                                                       
Query: 370 tt--tcctgaggttggcttacagattcagaggttcagtccataatcatcaaggaggaagc 427
           ||  |  || || |||||| ||| |||||||||||||||||| |||||||||| || || 
Sbjct: 108 ttaat--tggggctggctttcaggttcagaggttcagtccattatcatcaaggtgggagt 165

                                                                       
Query: 428 atggcagcatccaggcaggcatggtgcaggaggagttgagagttctacatcttcatctga 487
            |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 166 gtggcagcatccaggcaggcatggtgcaggaggagctgagaattctacatctttatctga 225

                                                                       
Query: 488 aggtca-ctaggagaagacagtcttccatgtg--gttaggacagagggtctcaaagtcca 544
           ||| |  |||| |||| || | |||||| | |  | ||||||| ||||| | |||| |||
Sbjct: 226 agg-ctgctagcagaatactgacttcca-g-gcagctaggaca-agggtattaaagccca 281

                                            
Query: 545 cccccacagtgacacacttcctccaacaaggcc 577
             ||||||||||||||| | || ||||||||||
Sbjct: 282 tacccacagtgacacacctacttcaacaaggcc 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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