BAC Information

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BAC

Clone NameMSMg01-181M22
Chromosome15 (Build37)
Map Location 69,264,157 - 69,460,666
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665945, EG633752, Khdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181M22.T7 (MSMg01no181_m22.b1)MSMg01-181M22.TJ (MSMg01no181_m22.g1)
ACCAG374872AG374873
length741742
length of high quality
(start - end)
697 (43 - 739)292 (68 - 359)
definitionCHROMAT_FILE: MSMg01no181_m22.b1 PHD_FILE: MSMg01no181_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:22 2005CHROMAT_FILE: MSMg01no181_m22.g1 PHD_FILE: MSMg01no181_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,460,065 - 69,460,666)(69,264,157 - 69,264,440)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATACACGCGGAATT
CTTTCTGATGTTTCCCATAGTGTCATATGGATGTACCATAAATAAGCCAA
TCCTAGGAGTTCAGTTATATGCTCAGACAGGCACAGATACTGTCTAAACT
CACCAAACTTCCAATGGTAGGAGCAATGTGTACTTAACCAAAGTAATGAA
GAATACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACATACACATATGGAGAGAAAAAGAGACAGACAGACAGGCAGGG
AGAGACACAAAAAGAGATACAGAGACAAAGACAGAGAGAAATTGTTCCTT
CTGTTGGTATTGCCAATTATAGAAATACAGAGCCTGGTTTTGTTTCTATT
TCAATAAATTACAGGAAAACAATTGTCTGGATACAAAAAAAAAGAAATTT
TAGAAGAAAAAATTCTAAGGACAATCTTTTCATAAAACCTATAAGTCTTA
GGAATTTCTTAAATGTGTAGACAATTAAGAAAGAAAGTTAAAAGAATTTA
TCTGTCAATGCTTGCTTTCTCGAGAATCATGGGATATGGTCAGTGCATTA
AGTAACATGGAGACAGGAAGAGGTAACACATAACAAACAGGAGCACATAA
GCAGCTCAAAATGCTGCAATAAAGTATAAGATGCTAATGCAGAAGAATGC
GTGAGGATTTGAGAATGAATTTAGTCCATTTTAAGAGGTTT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTATTCCATGTGTGGCTTTTTATAGGTGTGTTGT
GGAGATCTGAACATAAGCCTTTTCCTGACCAAGCCATCTCTCTACTTCTG
GGCATTTGCTGTTACACTGAGAATGTCTTTATACTTCATCTGTGACCTCA
GCCTGCTTCCTGAGCCTCTGAATGCTTGTTGGCCACACTTACCTCCAAGC
TTTGGTTTTGTTGTTGTTTTGTTTTGTTTTTTTTTTTTGTTTTTGGTGCC
GAATCCACAGAGATTTCTTTGTTTGACTCTATTCAAAAATTTCCTTATCC
ATGTTTTTTTTTTTCTCCCCCCCCCCCCCCCTATTCTTAATGAAATGGTC
TTGAAAACAGCCTTGTTTTTAAAAAAAAAAAAAATAGCTTCCGCTATGTT
TATTTTTTAGGTTATATTTTTCTATAAAAGGCTTATGGAGTTTTAGAATC
ACAACTATTTATGAGCACTGACTGACTATAATGAGAACTTTGATACTTAT
GAATGAGCCTTATCTCAAACTCTATAGGCCTGACTCTATGCAACTCCATA
ATCCCATAGTCCTGCATGGCAGTTCATAGTTCTTTCTTTCCCCCCTTGGT
ACTTTCCTCTTCCTTTTTTGCACATTGATATTCTCTTGTCTCCCTGTTTT
ACACCTCATCGACTTTGTTTGTTCTCCTGTTTACTCGTTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_m22.b1 MSMg01no181_m22.b1 CHROMAT_FILE:
MSMg01no181_m22.b1 PHD_FILE: MSMg01no181_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:22 2005
         (697 letters)



>mm_chr15_69459570_69460666
          Length = 1097

 Score = 1129 bits (584), Expect = 0.0
 Identities = 597/602 (99%), Gaps = 2/602 (0%)
 Strand = Plus / Minus

                                                                        
Query: 98   ctgtctaaactcaccaaacttccaatggtaggagcaatgtgtacttaaccaaagtaatga 157
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 ctgtctaaacttaccaaacttccaatggtaggagcaatgtgtacttaaccaaagtaatga 1038

                                                                        
Query: 158  agaat--acacacacacacacacacacacacacacacacacacacacacacacacacaca 215
            |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 agaatacacacacacacacacacacacacacacacacacacacacacacacacacacaca 978

                                                                        
Query: 216  catacacatatggagagaaaaagagacagacagacaggcagggagagacacaaaaagaga 275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977  catacacatatggagagaaaaagagacagacagacaggcagggagagacacaaaaagaga 918

                                                                        
Query: 276  tacagagacaaagacagagagaaattgttccttctgttggtattgccaattatagaaata 335
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 917  tacagagacaaagacagagagaaattggtccttctgttggtattgccaattatagaaata 858

                                                                        
Query: 336  cagagcctggttttgtttctatttcaataaattacaggaaaacaattgtctggatacaaa 395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857  cagagcctggttttgtttctatttcaataaattacaggaaaacaattgtctggatacaaa 798

                                                                        
Query: 396  aaaaaagaaattttagaagaaaaaattctaaggacaatcttttcataaaacctataagtc 455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797  aaaaaagaaattttagaagaaaaaattctaaggacaatcttttcataaaacctataagtc 738

                                                                        
Query: 456  ttaggaatttcttaaatgtgtagacaattaagaaagaaagttaaaagaatttatctgtca 515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737  ttaggaatttcttaaatgtgtagacaattaagaaagaaagttaaaagaatttatctgtca 678

                                                                        
Query: 516  atgcttgctttctcgagaatcatgggatatggtcagtgcattaagtaacatggagacagg 575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677  atgcttgctttctcgagaatcatgggatatggtcagtgcattaagtaacatggagacagg 618

                                                                        
Query: 576  aagaggtaacacataacaaacaggagcacataagcagctcaaaatgctgcaataaagtat 635
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617  aagaggtaacacataacaaacaggagcacataagcagctcaaaatgctgcaataaagtat 558

                                                                        
Query: 636  aagatgctaatgcagaagaatgcgtgaggatttgagaatgaatttagtccattttaagag 695
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 557  aagatgctaatgcagaagaatgggtgaggatttgagaatgaatttagtccattttaagag 498

              
Query: 696  gt 697
            ||
Sbjct: 497  gt 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no181_m22.g1 MSMg01no181_m22.g1 CHROMAT_FILE:
MSMg01no181_m22.g1 PHD_FILE: MSMg01no181_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:22 2005
         (292 letters)



>mm_chr15_69263957_69264648
          Length = 692

 Score =  513 bits (265), Expect = e-150
 Identities = 281/289 (97%), Gaps = 5/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattccatgtgtggctttttataggtgtgttgtggagatctgaacataagccttttcctg 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttcatgtgtggctttttataggtgtgttgtggagatctgaacataagccttttcctg 260

                                                                       
Query: 61  accaagccatctctctacttctgggcatttgctgttacactgagaatgtctttatacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaagccatctctctacttctgggcatttgctgttacactgagaatgtctttatacttc 320

                                                                       
Query: 121 atctgtgacctcagcctgcttcctgagcctctgaatgcttgttggccacacttacctcca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 atctgtgacctcagcctgcttcctgagcctctgaatgcttgttggccacacttaccacca 380

                                                                       
Query: 181 agctttggttttgttgttgttttgttttgttttttttttttgtttttggtgccgaatcca 240
           ||||||||||||||||||||||||||||||||||||     |||||||||||||||||||
Sbjct: 381 agctttggttttgttgttgttttgttttgttttttt-----gtttttggtgccgaatcca 435

                                                            
Query: 241 cagagatttctttgtttgactctattcaaaaatttccttatccatgttt 289
           |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cagagatttcattgtttgactctattcaaaaatttccttatccatgttt 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)