BAC Information

Click to search

BAC

Clone NameMSMg01-181P02
Chromosome15 (Build37)
Map Location 6,215,729 - 6,216,043
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039322, LOC100039308, LOC666291, LOC666319, LOC100039358, LOC666323
Downstream geneDab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr, Lifr, Egflam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181P02.T7 (MSMg01no181_p02.b1)MSMg01-181P02.TJ (MSMg01no181_p02.g1)
ACCAG374965AG374966
length711717
length of high quality
(start - end)
---322 (48 - 369)
definitionCHROMAT_FILE: MSMg01no181_p02.b1 PHD_FILE: MSMg01no181_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:32 2005CHROMAT_FILE: MSMg01no181_p02.g1 PHD_FILE: MSMg01no181_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATTAAGTGAGAGCCTGGNGGCGCCTGTTTCCGACCNGANGNGAANNANA
GAAGGTTCCCGGAGGAGANGANNCNGGGAGAAGGAGAAAGGGANNNCCGG
GGAGGGGTTAACCCCCAAAAAACAGACAACACAACCAAGAAAACGGNGAA
CNANGCAGCGCAAAGGCGACAGGGAACNCGAAGAGCAAGCCCGCCCCAAG
AGCCAGAGCACCCCCGGGAAGAAGCCAAGGGAGGAAAGACCCCCGATTTC
TTGCAGGGGATAGGGAAGGAAGAGTTCCTTTGGATAGCATGGGAACAGCG
AACAGACGACTTTTTTTTTTTTGCAACCACCCCCCAAAAACCAGAGAAAA
GAGTTTTTCTCCCCCCCCCCCCCTAATATATTCCCCACCGCCCACCCATT
TCCCCGCCCTTGTTCAAAAAAAAAACCCCCTTTTTTTATCCGCCCCCCTG
TTTATATAGATAAAATAAAAACAACTTGCCTCGACGTTCACATAAACACC
CACACAATTATAACCCTTTTCCCCCCTTCTTTTTCCCCCCCCCCCATTTT
TTTGAACACACTTTTCTCCCCCACCCCCCCCCCCTTCGTCTTTTTTCTCC
CCCCCCCCCCCCCCCTTTTTTTTTTAACCCCCCCCCCCCCCCACCCTAGT
TCCTTTTTTTTTTTTTCTCCCCCCCCCTCTTCCCCTCTTTTATATATCGT
CCCCCTAAATT
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAGATCTTCATCTGAAGGCTGTTAGTGTATTTCAGGTACCTAC
AGTGACACACCTACTCCAAGAGGGCCACACCTTCTAATAGTGCCACTCCC
TGGCCTGAGCATTTGCAAACCATCACAACAATGTATGAGTTTCCTAAAGT
TGCAACAGCATCAAATTTACCCTTACAATAGGGAACAAAGGAATTTCACA
TCAAAATGCCAATTCATCTGGTTAATAAGTGGGCTAGTGAGCTGGGTGAT
TCTGAATAAAGAAATACAAATGGCTAGTGATTACCTGAAAAAAACTACAT
TCAGTAGTAACAGTTGTCAGGTAGATATACATTAAAAGTATTGAGATTCC
TTCTTACCTGGTCAGATGCCCATCGTTGAGTGATTCTCCTCCCACTGAGG
CCAGACAAGGCAGTTTTCTGCTACAAATGTAGCATGGGTCATGGACTAGC
CCATGTAAGCTTTTTGGTTGGTGGCTTAGTCTCTAGGATCTCTGAGGAGT
CCAGTTAGTTGATACTGTTGTTCTTCCTGTGGGGTTTCAATCCCCTTCAT
CTCCTTCAGGCCTTCCTCTAACTCTTCTATAGGGTTCCCCAGCCTCAGCT
CAATGATTGTTTGTTAAGTATTGTCATCTGTCTCAGTCAGCTACCGGCGG
AGCCTCTCAGAGGACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_p02.g1 MSMg01no181_p02.g1 CHROMAT_FILE:
MSMg01no181_p02.g1 PHD_FILE: MSMg01no181_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:33 2005
         (322 letters)



>mm_chr15_6215525_6216243
          Length = 719

 Score =  551 bits (285), Expect = e-161
 Identities = 309/319 (96%), Gaps = 5/319 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagatcttcatctgaaggctgttagtgtatttcaggtacctacagtgacacacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagatcttcatctgaaggctgttagtgtatttcaggtacctacagtgacacacc 264

                                                                       
Query: 65  tactccaagagggccacaccttctaatagtgccactccctggcctgagcatttgcaaacc 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tactccaacagggccacaccttctaatagtgccactccctggcctgagcatttgcaaacc 324

                                                                       
Query: 125 atcacaacaatgtatgagtttcctaaagttgcaacagcatcaaatttacccttacaatag 184
           |||||| |||||||||||||||||| ||||||||||||||||||    ||||||||||||
Sbjct: 325 atcacagcaatgtatgagtttcctagagttgcaacagcatcaaa----cccttacaatag 380

                                                                       
Query: 185 ggaacaaaggaatttcacatcaaaatgccaattcatctggttaataagtgggctagtgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaacaaaggaatttcacatcaaaatgccaattcatctggttaataagtgggctagtgag 440

                                                                       
Query: 245 ctgggtgattc-tgaataaagaaatacaaatggctagtgattacctgaaaaaaactacat 303
           ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 441 ctgggtgattcctgaataaagaaacacaaatggctaatgattacctgaaaaaaactacat 500

                              
Query: 304 tcagtagtaacagttgtca 322
           |||||||||||||||||||
Sbjct: 501 tcagtagtaacagttgtca 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 719
Length adjustment: 9
Effective length of query: 313
Effective length of database: 710
Effective search space:   222230
Effective search space used:   222230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)