CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACAGTCAGCTATTGGATGGATCAC
AGGGCCCCCAATGGAGGAGCTAGACAAAGTACCCAAGGAGCTAAAGGGAT
CTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCGGAG
CTCTTGTCTCTAGCTGCATATGTATCAAAATATGGCCTAGTCAGCCATCA
CTGGAAAGAGAGGCCCATTGGTCATGCAAACTTTATATGCCTCAGTACAG
GAGAACGCCAAGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGNNNNCCC
TNTTCNNTTTTTTTTTTTTTCCCCCCCCCCCCCCCTTTTATTTTTTCTCC
CCCCTTTTCTTCCCCTTTCCCCCCCCTTTTAAAAAAAAAATTTCCCCCCC
TTGTTTTTTTTTCCCCCCCCCCTTTTTTTTTCCCTCAATTAATAACTCTT
CCACCTTTCTTCCTTGCTATTTAGCAAATCTATTTCTTATTTTATCCCTT
TTTTCCCCCCTTATTTTTTTCCCCACCCCCCTTTTTTTAATGACAACCCA
CTTTTAACACCCCACCCTCCCCCTCACCTCCCCCCTATTTTTCACCCCCC
CCCCCCCCCCCCCTTTTTTTTTTTAAGTAACACTCCATTCCTCTCTTTTT
TTTTTTCCTTTTTTTTTACACCCTCCCCCCCACCCCCCTCTACCCCCCAT
TTTATCCTCTTCCTCCCTTATAAATAA

TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATGTAGATCTCCTCCAATCTGTATAGCAGTAACAAATGCATGT
TTGGGAAATAGCTCTTATCAGAAACCCTTTAAGAACCGATTCTAGTTCAA
GAATGTTTGACATGCAACGTTTTAGTAGATGGCCTCACACTCTATGTAAG
GAAGGTTTTGTGTTTTGTTTTTTAAAGCTTGAGTTTAATATCACTAGTGG
CTAATCCATCATTGTTATTGATAAAGAAAGTTGTGACATATACCACGACA
GAGACTACACATGGGAAGTACACGGGGTCCGGCACTTGCTTCATGTATTC
ACTTTGCTTCTCCACTTCTCTCCGCTAGGGCAAACAGGTACTCTGAGACA
CTCAACTGTAAGGCCCATCGCAAATACAGCCAAGTGGACAACTTGAAAGG
GAGGTGGCAGCAGTGGGCCGATGAACACGTCCAGTCCCAGAAGCTCAATC
CCTTCAGTGACGAATTTGACTATGACCTAGCCATGTCCACTCGGCTCCAC
AAGGGAGACGAGGGCTATGGCCGCCCCAAAGAGGGAAGCAAGACAGCTGA
AAGGGCCAAGCGAGCGGAAGAGCACATCTATCGGGAAATTATGGAACTGT
GCTTTGTTATCCGCACAATGGCTCGCCACAGACGAGATGTCAAGATCCAG
GTTACTTTCGGAGAACTCTTTGATCGCTATGTGCGAAATT

Query= MSMg01no181_p22.g1 MSMg01no181_p22.g1 CHROMAT_FILE:
MSMg01no181_p22.g1 PHD_FILE: MSMg01no181_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:37 2005
         (631 letters)



>mm_chr15_41697397_41698427
          Length = 1031

 Score = 1160 bits (600), Expect = 0.0
 Identities = 621/628 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctatgtagatctcctccaatctgtatagcagtaacaaatgcatgtttgggaaat 63
           ||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 831 ggaattctatgtagaactactccaatctgtatagcagtaccaaatgcatgtttgggaaat 772

                                                                       
Query: 64  agctcttatcagaaaccctttaagaaccgattctagttcaagaatgtttgacatgcaacg 123
           ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 771 agctcttatcagaaaccctctaagaactgattctagttcaagaatgtttgacatgcaacg 712

                                                                       
Query: 124 ttttagtagatggcctcacactctatgtaaggaaggttttgtgttttgttttttaaagct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ttttagtagatggcctcacactctatgtaaggaaggttttgtgttttgttttttaaagct 652

                                                                       
Query: 184 tgagtttaatatcactagtggctaatccatcattgttattgataaagaaagttgtgacat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tgagtttaatatcactagtggctaatccatcattgttattgataaagaaagttgtgacat 592

                                                                       
Query: 244 ataccacgacagagactacacatgggaagtacacggggtccggcacttgcttcatgtatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ataccacgacagagactacacatgggaagtacacggggtccggcacttgcttcatgtatt 532

                                                                       
Query: 304 cactttgcttctccacttctctccgctagggcaaacaggtactctgagacactcaactgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cactttgcttctccacttctctccgctagggcaaacaggtactctgagacactcaactgt 472

                                                                       
Query: 364 aaggcccatcgcaaatacagccaagtggacaacttgaaagggaggtggcagcagtgggcc 423
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaggcccatcggaaatacagccaagtggacaacttgaaagggaggtggcagcagtgggcc 412

                                                                       
Query: 424 gatgaacacgtccagtcccagaagctcaatcccttcagtgacgaatttgactatgaccta 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 411 gatgaacacgtccagtcccagaagctcaatcccttcagtgacgaatttgactatgatcta 352

                                                                       
Query: 484 gccatgtccactcggctccacaagggagacgagggctatggccgccccaaagagggaagc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gccatgtccactcggctccacaagggagacgagggctatggccgccccaaagagggaagc 292

                                                                       
Query: 544 aagacagctgaaagggccaagcgagcggaagagcacatctatcgggaaattatggaactg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aagacagctgaaagggccaagcgagcggaagagcacatctatcgggaaattatggaactg 232

                                       
Query: 604 tgctttgttatccgcacaatggctcgcc 631
           ||||||||||||||||||||||||||||
Sbjct: 231 tgctttgttatccgcacaatggctcgcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)