BAC Information

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BAC

Clone NameMSMg01-183G22
Chromosome15 (Build37)
Map Location 99,938,063 - 99,938,671
singlet/doubletsinglet
Overlap gene4930478M13Rik
Upstream geneSpats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik
Downstream geneDip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183G22.T7 (MSMg01no183_g22.b1)MSMg01-183G22.TJ (MSMg01no183_g22.g1)
ACCAG376022AG376023
length722714
length of high quality
(start - end)		622 (45 - 666)286 (78 - 363)
definitionCHROMAT_FILE: MSMg01no183_g22.b1 PHD_FILE: MSMg01no183_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:26 2005CHROMAT_FILE: MSMg01no183_g22.g1 PHD_FILE: MSMg01no183_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGCACTCGGCCGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCA
GCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAAC
CCTGTCTCGAACCCCCCCCCCCAAAAAACAAACAAACAAACAAACCCAAA
CTTAGTGTGTCCCTGCTACATCAATGCTCGGCTTAGGAGGAGGATCTTAG
TATTTGCTGCATGAGTGAGCGAGCATCCCAGCCCTGTGTCATGGTGCTTT
CCAGTTAAGGTAAGCATTGGTCCTTCATCTTTAGAAAAAACAAACACACC
TGGGACTCTGGCACACAGTCACCTCGTTCTGTTCCCTGGAGACTGAGGAC
TGAGACAAACTCAGTTTTTCATTCTGACCATCAGCTTCTGCCCTCTCTTA
CCCTTCCTGTAAACTGTTCCCTGGGCTGCCGGTGAAGAAGCTGTTTTCCA
TTCTGACTTCACATTTGTGACCGCATCCACCATGATTTTTCCTCTCCCTT
CCTTCCCATCCTTTTGTGGCTTCCCTGCTCTCTTAGTANACCCACCCCCA
CCACATGTCAGTTTACCCCAGGATTCCTTCTCTGGCCTTCCTCTCTTCTC
ACACCAAATTCTTTCTGGGTGATATCATTCACTCTGCCACTTCAGCTGCC
ACCTCCTACGCAATGGTTGCTA

CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGGGGTTAATGGTTTACTGAGT
GGTTAAACTCATTTGAGATGTGTGGCCCCAAGTAACAGGCTCAAACTCTT
TTTCAGATAGGGTTTCTTCTCTATGTAGCCCTGGCTATCCTAGAATGTGC
TTTGTAGACCAGCCTGGCCTTGAACTCAGAGATCTACCTTGTTCTTCCTC
CTGGGTGCTGACATTAAAGGTGTAAGTCATCTTGCTAGAGAGATGGCTCA
GCTGTTACGAGCACTGGCTGCTCTTCCAGAGGACCCAGATCAACTTCCAG
CACCCACACGGCAGCTTACCTCNTGTCTCGCCCTCTGCTCCCAGGGGATT
CTGACATCCTCAGACAGACAGATGCACAGGAGAAACACTAATGCACATAC
NATTAAAAAGTGTGTGTCACCACACCCAGCCTGGTCTTAAATTCTCGGTC
CTCCTGTTTCAGGCTCTTGGTCTCAACCGAGATCCCAGGTGTGCACCGCA
CGCTAGAGTGGGTTAACCACTGCTTCAATCCCAGCTTTTATGCCCTGGAC
TCTTTAGCCTGGTGGACAGAGTGCCTTGCATGTGCGTTAGAGTGAGACCA
AGTCTTACTTTATATCGTATTACTTGTTTAGATCTGCTCTGCGTCCTGAC
TGCCTCCTTAGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_g22.b1 MSMg01no183_g22.b1 CHROMAT_FILE:
MSMg01no183_g22.b1 PHD_FILE: MSMg01no183_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:26 2005
         (622 letters)



>mm_chr15_99937850_99938871
          Length = 1022

 Score = 1112 bits (575), Expect = 0.0
 Identities = 603/615 (98%), Gaps = 8/615 (1%)
 Strand = Plus / Plus

                                                                       
Query: 10  ccagcactcggccggcagaggcaggcggatttctgagttcgaggccagcctggtctacaa 69
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ccagcactcgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaa 273

                                                                       
Query: 70  agtgagttccaggacagccagggctacacagagaaaccctgtctcgaaccccccccccca 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 274 agtgagttccaggacagccagggctacacagagaaaccctgtctcgaacccccccc---- 329

                                                                       
Query: 130 aaaaacaaacaaacaaacaaaccc-aaacttagtgtgtccctgctacatcaatgctcggc 188
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 330 -aaaacaaacaaacaaacaaacccaaaacttagtgtgtccctgctacatcaatgctcggc 388

                                                                       
Query: 189 ttaggaggaggatcttagtatttgctgcatgagtgagcgagcatcccagccctgtgtcat 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttaggaggaggatcttagtatttgctgcatgagtgagcgagcatcccagccctgtgtcat 448

                                                                       
Query: 249 ggtgctttccagttaaggtaagcattggtccttcatctttagaaaaaacaaacacacctg 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggtgctttccagttaaggtaagcattggtccttcatctttagaaaaaacaaacacacctg 508

                                                                       
Query: 309 ggactctggcacacagtcacctcgttctgttccctggagactgaggactgagacaaactc 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggactctggcacacagtcacctcgttctgttccctggagactgaggactgagacaaactc 568

                                                                       
Query: 369 agtttttcattctgaccatcagcttctgccctctcttacccttcctgtaaactgttccct 428
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 569 agtttttcattctgaccatcagcttctgccctctcttacctttcctgtaaagtgttccct 628

                                                                       
Query: 429 gggctgccggtgaagaagctgttttccattctgacttcacatttgtgaccgcatccacca 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gggctgccggtgaagaagctgttttccattctgacttcacatttgtgaccgcatccacca 688

                                                                       
Query: 489 tgatttttcctctcccttccttcccatccttttgtggcttccctgctctcttagtanacc 548
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 689 tgatttttcctctcccttccttcccatccttttgtggcttccctgctctcttagta-acc 747

                                                                       
Query: 549 c-acccccaccacatgtcagtttaccccaggattccttctctggccttcctctcttctca 607
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ccacccccaccacatgtcagtttaccccaggattccttctctggccttcctctcttctca 807

                          
Query: 608 caccaaattctttct 622
           |||||||||||||||
Sbjct: 808 caccaaattctttct 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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