BAC Information

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BAC

Clone NameMSMg01-184D13
Chromosome15 (Build37)
Map Location 64,582,858 - 64,749,283
singlet/doubletdoublet
Overlap geneAdcy8
Upstream geneLOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
Downstream geneLOC268812, LOC100040790, LOC665836, C920006C10Rik, Oc90
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184D13.T7 (MSMg01no184_d13.b1)MSMg01-184D13.TJ (MSMg01no184_d13.g1)
ACCAG376574AG376575
length722729
length of high quality
(start - end)
317 (61 - 377)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no184_d13.b1 PHD_FILE: MSMg01no184_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:29 2005CHROMAT_FILE: MSMg01no184_d13.g1 PHD_FILE: MSMg01no184_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,748,971 - 64,749,283)(64,582,858 - 64,583,140)
sequence
AAAATGNNNNNAATATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCCTAAGTGCTCACTCACCACAACCTACTCTC
TCCCCCAGGGGCTGCTTGTCCTCCTCAAACTCTCCCTCTTCTGCTCTTCT
TCAGATCCTAAATTCTCCACCCATCTTTCCATCTTCCTAATAGCTCATGA
ACTTTCATACCTCTTTGTCTTTACATCTGCATTCTGGGTCAATCCCCCGC
CCCCTCCCCCTATTCTTCATTTGATCTGGCATGTTCTATTTGTCCAGATT
CTCACAAGCCACTCTTCCTGGTGCATGCCTTGTTTGGGTTTCTCTGCAGC
AATCACACTGTCTGAAACTATCTTATCTTTTTGCTGCCCCCCTTTTGTGT
TTACCTGAAGTCTCGATGCTAACAAGAACACACACACACTAAAAGGGCAA
GAGATTGCCCTCGTGTTGACGATTTCATCCATAGCACTTAAACAAATACC
AGACACAGAGTAGGCACCTAAGGGAATCACTATACAAACAAGACTGCTCA
TCACATGATTACAAGATATTCAACTTCCCAAACTCTTTGTTGATTAAAGA
ATCCTCCACCCATGCACATCTATACAAGCATGAATACACAATTAAGTTGT
TTGTATATAAGACAGGTTTTTACTTCTAAACACTGTTTGGAGAAACCAAA
ATACACAGCATGCCATTTGTAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTGTATTGTTGCTGGATATG
AGAGGCAAGGAAACCTTTCATTTCTGAAACCGAGTCTCAAAGAGAATGAC
AAGGGATTTGTAAACAGCTCTATCCGAGTCCTCTCTAGAATTAAGGTCTA
ATTATTCTCTGAAGTCTGCACTTAAAATACAGATTGGGTTGGTAGTACAC
TGTGACATTTGCTGGAGAGGCAAGATCAGTGCAGAGGAGTGAATGACCCA
CAGCAGCCTGTAGTTCAGTAGGGTTCAGAACCTCAGACCATACCCAAAGA
GTACACTTGTGTGACACTTCCCAACCTGCAAAGAGCTGGTGGCACATTTG
ATACTGAGGCAACCCTGAGTGGTCAGCATTCTTAGCTCTTTCAAAAGATG
CGTATTATGTGGTTTGGGAAGTTGAAAGGAGCCTGAATCGCCCCAAATGG
ACATGGTTGATTTACATGTGGCAGTCCTCAGAATGGGACACTATTATGCT
CATTTTTGATAGTATCTTGAAAATATCTATTTTGTTTTTAGTTGTGTGTG
TGTGTGTGTGTGTGTGTGTGNGNNNTTTTTTTTTNNGGNNTTTTTATTTT
TTTTTATTTTTGTGGTTGGGTTTTTTGGGTTGGTTTTNGGTTTTTTGGGG
TTTGCGTTTTGTGTTTTGTATTAGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_d13.b1 MSMg01no184_d13.b1 CHROMAT_FILE:
MSMg01no184_d13.b1 PHD_FILE: MSMg01no184_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:29 2005
         (317 letters)



>mm_chr15_64748767_64749483
          Length = 717

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaagtgctcactcaccacaacctactctctcccccaggggctgcttgtcctcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcctaagtgctcactcaccacaacctactctctcccccaggggctgcttgtcctcc 458

                                                                       
Query: 65  tcaaactctccctcttctgctcttcttcagatcctaaattctccacccatctttccatct 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tcgaactctccctcttctgctcttcttcagatcctaaattctccacccatctttccatct 398

                                                                       
Query: 125 tcctaatagctcatgaactttcatacctctttgtctttacatctgcattctgggtcaatc 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tcctaatatctcatgaactttcatacctctttgtctttacatctgcattctgggtcaatc 338

                                                                       
Query: 185 ccccgccccctccccctattcttcatttgatctggcatgttctatttgtccagattctca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ccccgccccctccccctattcttcatttgatctggcatgttctatttgtccagattctca 278

                                                                       
Query: 245 caagccactcttcctggtgcatgccttgtttgggtttctctgcagcaatcacactgtctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 caagccactcttcctggtgcatgccttgtttgggtttctctgcagcaatcacactgtctg 218

                        
Query: 305 aaactatcttatc 317
           |||||||||||||
Sbjct: 217 aaactatcttatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no184_d13.g1 MSMg01no184_d13.g1 CHROMAT_FILE:
MSMg01no184_d13.g1 PHD_FILE: MSMg01no184_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:30 2005
         (287 letters)



>mm_chr15_64582658_64583344
          Length = 687

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttgtattgttgctggatatgagaggcaaggaaacctttcatttctgaaaccgagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct: 201 cttttgtattgttgctggatatgagaggcaaggaaacctttcattgctgcaatcgagtct 260

                                                                       
Query: 61  caaagagaatgacaagggatttgtaaacagctctatccgagtcctctctagaattaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaagagaatgacaagggatttgtaaacagctctatccgagtcctctctagaattaaggt 320

                                                                       
Query: 121 ctaattattctctgaagtctgcacttaaaatacagattgggttggtagtacactgtgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaattattctctgaagtctgcacttaaaatacagattgggttggtagtacactgtgaca 380

                                                                       
Query: 181 tttgctggagaggcaagatcagtgcagaggagtgaatgacccacagcagcctgtagttca 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tttgctggagaggcaagatcagtgcagaggagtgaatgacccatagcagcctgtagttca 440

                                                      
Query: 241 gtagggttcagaacctcagaccatacccaaagagtacacttgt 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagggttcagaacctcagaccatacccaaagagtacacttgt 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)