BAC Information

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BAC

Clone NameMSMg01-185A21
Chromosome15 (Build37)
Map Location 24,845,232 - 24,845,775
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666989, LOC666999, LOC100040492, LOC100040499
Downstream geneLOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185A21.T7 (MSMg01no185_a21.b1)MSMg01-185A21.TJ (MSMg01no185_a21.g1)
ACCAG377160AG377161
length680692
length of high quality
(start - end)
313 (38 - 350)558 (128 - 685)
definitionCHROMAT_FILE: MSMg01no185_a21.b1 PHD_FILE: MSMg01no185_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:40 2005CHROMAT_FILE: MSMg01no185_a21.g1 PHD_FILE: MSMg01no185_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
AAATGCCAGTCTCAATGTGATCAAACTAGTAGAACAACAATACCCATTGA
GCATCTTAGGCCTACTTTAAAAATTTTCACACATTGTGATGGTTTGTGCA
TGCTTGGCCCAGGGAGTGACACTATTAGGAAGGGTAGCCTTGTTGGAATA
TGTGTGTCACCGTGGGTGTGGGATTTAATACCCTTGTCCTAGCTGCTTGG
AAGTGATTATTTTGTTAGCAGCCTTCAGATAAAGAAGTAAAACTCTTAGT
TCCTCCTTTACCATGCCTGCTGGGATGCTACCATGTTCCTGCTTTGTTGA
TAATGGACACCTATGAAACTGTAAGCCAGCCCAAGGAGCTGAAGGGATTT
CTAACCCCATAGAAAGAACAACAATATCAACCAACCAGAGGTCACAGAGT
CCCCAGGGACTAAACCACCAACTAAAGAGTACAATGGGGGCTCTAGAGTA
CATGGCTCTAGCTGCATATATAGCAGAGGATGGCCTTATCTGGCATCAAT
GGGAGGGAATCTGTGCAGGCTCCGTGACCCAGCATAGGGGGTCATAGACT
AGGGCACTGAGGTGTTGTTGCCTCGCTTCTTTTCCCCCCTTTTCCCCCTC
CTTTTTTTTTCCCTCCTCTTTCTTTCGTCC
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTACCATTCATCTTGCTTGCAA
TTTGGGAAAATGCCTTGAACACCGTGAGAATTAACCAGAAAGCCCAACCC
AAGAGTCCAAGACAGGATGTCCTGAAGTTTCCAAAAAAAAAAAAAAAAAA
AAAAAAAGGCTGTGTGACCTGCATTGTGTGACCTGTATTGTGTGTTACCT
GGATCCTGAACCACACAGGAGCAATCCGAAGAACTTCTATTCCCACTGAA
TTCTCTGCCTTGTCCAAAAATGCAGTTGCAAAGCTAAATGGGGATCTAAT
ATTTACTAATTTTCTCACTAACCAATTCAGGCACTGGTGGAATGGCTTTA
GAAAATTGTGACTTTTCTTTTATACTTGGGCTTCTTCCAGAATTTATTTT
GAAGCAAGTTCACATTTGCATTCAAATATGAGTATGTATATCATTTACAT
ACCCATTTCTGTTTTCTAGGAAATCAGACACAGACTCTGTTGTGCTGGAT
GCGAGAAATTTTTATCTACAGTGTTCATGTGCTGGTTAAAGTGAGTAAAT
CCTCTTTGACAGTTGAGAGAAAGGGTACGTTGTCCAGGAAGAACAAACCA
AAGATGTTTGTGTGAACTTGCAGAACATCACCTTCGCATGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_a21.g1 MSMg01no185_a21.g1 CHROMAT_FILE:
MSMg01no185_a21.g1 PHD_FILE: MSMg01no185_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:40 2005
         (558 letters)



>mm_chr15_24845018_24845975
          Length = 958

 Score =  936 bits (484), Expect = 0.0
 Identities = 533/558 (95%), Gaps = 14/558 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattaaccagaaagcccaacccaagagtccaagacaggatgtcctgaagtttccaaaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 215 gaattaaccagaaagcccaacccaagagtccaagacaggatgtcctgaagtttcc----- 269

                                                                       
Query: 61  aaaaaaaaaaaaaaaaaaaaggctgtgtgacctgcattgtgtgacctgtattgtgtgtta 120
                    ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 270 ---------aaaaaaaaaaaggctgtgtgagctgcattgtgtgacctgtattgtgtgtta 320

                                                                       
Query: 121 cctggatcctgaaccacacaggagcaatccgaagaacttctattcccactgaattctctg 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 cctggatcctgaaccacacaggagcaatccgaagaacttctatttccactgaattctctg 380

                                                                       
Query: 181 ccttgtccaaaaatgcagttgcaaagctaaatggggatctaatatttactaattttctca 240
           | |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 381 ctttgtccaaaaatgcagttgcaaagctaaatggggatctaatatttactacgtttctca 440

                                                                       
Query: 241 ctaaccaattcaggcactggtggaatggctttagaaaattgtgacttttcttttatactt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaatcaattcaggcactggtggaatggctttagaaaattgtgacttttcttttatactt 500

                                                                       
Query: 301 gggcttcttccagaatttattttgaagcaagttcacatttgcattcaaatatgagtatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggcttcttccagaatttattttgaagcaagttcacatttgcattcaaatatgagtatgt 560

                                                                       
Query: 361 atatcatttacatacccatttctgttttctaggaaatcagacacagactctgttgtgctg 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 atatcatttacatacccatttctgttttctaggaaatcagacacggactctgttgtgctg 620

                                                                       
Query: 421 gatgcgagaaatttttatctacagtgttcatgtgctggttaaagtgagtaaatcctcttt 480
           |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 621 gatgcgagaaatttttatctacagtgttcacgtgctgcttaaagtgagtaaatcctcttt 680

                                                                       
Query: 481 gacagttgagagaaagggtacgttgtccaggaagaacaaaccaaagatgtttgtgtgaac 540
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacagttgagagaaaggttacgttgtccaggaagaacaaaccaaagatgtttgtgtgaac 740

                             
Query: 541 ttgcagaacatcaccttc 558
           |||||||||||| |||||
Sbjct: 741 ttgcagaacatcgccttc 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)