BAC Information

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BAC

Clone NameMSMg01-186J05
Chromosome15 (Build37)
Map Location 45,936,870 - 45,937,164
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnv1, LOC100039389, EG432951
Downstream geneLOC100039438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186J05.T7 (MSMg01no186_j05.b1)MSMg01-186J05.TJ (MSMg01no186_j05.g1)
ACCAG378216AG378217
length765732
length of high quality
(start - end)
466 (46 - 511)295 (75 - 369)
definitionCHROMAT_FILE: MSMg01no186_j05.b1 PHD_FILE: MSMg01no186_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:36 2005CHROMAT_FILE: MSMg01no186_j05.g1 PHD_FILE: MSMg01no186_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCTTACTAATAGTTGAGTAGTACTCCATCATGTAAAAGTACTA
CATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGC
TTCTGGCTATTATAAATAAGGCTGCTATGATCATAGTGGAGCATGTGTCC
TTCTTATCGGTTGGAACATCTTCTGGATATGTGCCCAGAGTTGTCTTTTG
TGAGGCTATACAGAGGCCTAGCAAACACAGAAGTGGATACTCACAGTCAG
CTATTGGGTGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCA
AAGAAGCTAAAGGTGTCTGCAACCCTATAGGTGGAACAACCATATGAATT
AACCAGTACCCCCCAGAGCCCGCCCCTCTAGCTGCATATGTATCAGAAGA
TGGCCTAGTCGGCCATCATTTGAAAGAGAGGCCCATTGGTCTTGCAAACT
TTATATGCCTCAGTACAGGGCAATGTCTGTGTCCAGATATGATACGTGTA
CGTCCTTCTTATTACTACCAAATCTATTATTCTATCCCTTCCCCACATCT
TTTTTTTTCTTTTACTCTCTCTCTTGCTCGCTCTTTTATTACTCTAACTT
TCTCCTTCTTCTTTCCCCACTTCATTCTATCTCCTTTCCTTATCTTTATC
CCATTCTATCCCTTATCCGAATTCATATTTTTCCTTTACATCCTTTTCTT
CTTTCTCTTTCATTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCCATTCATTTGGAATTTAACATA
AACTGTAGTATCAATATGCTGTTTCTGAAGTTAAAAATAAATTCCCTACT
TTAGAAGTATTGTTTCTATGTTACTTCCTCAGTTATGCCTTACAAATTTC
CAATAGTAGGTCACCCATGTTTGTTTCTGACATTTTGTTTTTGATGTGGA
AAGTGCTAATGATAAAGGGAGCCTGGAAATATCAAAACAGTATCTAAGGC
CAGAGTTCACTGAGCTCTAACTTCTAAAACAGAACTCAGTGTGCTTTCTC
ATTCTAGTGGGGATTTTACTTGGAATCCCACACCTTTGATAACTATGATC
CTGAGTATGTAAGCTAACCCCCATAATATCTATATACAAGTGTATTGTCT
ATATAAATCTACTTGATTTTAAAAATATGTTGAACTCAATATAATACCCT
TCTCAGCTAGATACTGAGATTTATTTAACATTTTTCAGAAATAACTTTCA
TGTATTACAAAGCCTTCTCTAATAGTAATAACAAAATTAATAATAATAGA
TTTTTTCCACATCCTTGAACAATACTTCCCCCCATGGAAACCAAAGATGT
CTGTGTTTATTGAACTTTATCCACTTGAACACCTTTTCTCAGATCTTGTT
CTTTGCTCTTGAGTAATATTTTACCCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_j05.g1 MSMg01no186_j05.g1 CHROMAT_FILE:
MSMg01no186_j05.g1 PHD_FILE: MSMg01no186_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:36 2005
         (295 letters)



>mm_chr15_45936670_45937364
          Length = 695

 Score =  563 bits (291), Expect = e-165
 Identities = 294/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actccattcatttggaatttaacataaactgtagtatcaatatgctgtttctgaagttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 actccattcatttggaatttaacataaactgtagtatcaatatgctgtttctgaagttaa 436

                                                                       
Query: 61  aaataaattccctactttagaagtattgtttctatgttacttcctcagttatgccttaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaataaattccctactttagaagtattgtttctatgttacttcctcagttatgccttaca 376

                                                                       
Query: 121 aatttccaatagtaggtcacccatgtttgtttctgacattttgtttttgatgtggaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aatttccaatagtaggtcacccatgtttgtttctgacattttgtttttgatgtggaaagt 316

                                                                       
Query: 181 gctaatgataaagggagcctggaaatatcaaaacagtatctaaggccagagttcactgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gctaatgataaagggagcctggaaatatcaaaacagtatctaaggccagagttcactgag 256

                                                                  
Query: 241 ctctaacttctaaaacagaactcagtgtgctttctcattctagtggggattttac 295
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 255 ctctaacttctaaaacagagctcagtgtgctttctcattctagtggggattttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)