Query= MSMg01no188_k14.b1 MSMg01no188_k14.b1 CHROMAT_FILE:
MSMg01no188_k14.b1 PHD_FILE: MSMg01no188_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:23 2005
(318 letters)
>mm_chr15_44952787_44953505
Length = 719
Score = 594 bits (307), Expect = e-174
Identities = 313/315 (99%), Gaps = 1/315 (0%)
Strand = Plus / Plus
Query: 5 gaattcatttgatccagtgtatattt-ctatacacgttagagaaaattttaatggtagta 63
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttgatccagtgtatattttctatacacgttagagaaaattttaatggtagta 264
Query: 64 acttagtgtttaatttgtcattcttccaacattggaaatacaggcagccatatggcttct 123
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 acttagtgtttaatttgtcattctttcaacattggaaatacaggcagccatatggcttct 324
Query: 124 ctcaccactgaatctgattgacatctcagttttagatatggcctcacagttctcccacaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcaccactgaatctgattgacatctcagttttagatatggcctcacagttctcccacaa 384
Query: 184 acagatttcccagaaatctaaaaaagtaggaatccagggaaagtcaaacattacaacatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagatttcccagaaatctaaaaaagtaggaatccagggaaagtcaaacattacaacatt 444
Query: 244 atatctgttctcatttttgtttgatcaaatttatctgctttagtaagctactgatatttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atatctgttctcatttttgtttgatcaaatttatctgctttagtaagctactgatatttt 504
Query: 304 atttttctaatagca 318
|||||||||||||||
Sbjct: 505 atttttctaatagca 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space: 219390
Effective search space used: 219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no188_k14.g1 MSMg01no188_k14.g1 CHROMAT_FILE:
MSMg01no188_k14.g1 PHD_FILE: MSMg01no188_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:23 2005
(289 letters)
>mm_chr15_45104560_45105248
Length = 689
Score = 547 bits (283), Expect = e-160
Identities = 286/287 (99%)
Strand = Plus / Minus
Query: 1 cataatttgattagttctgcctgtttttgaaaaggaaagaaagcttaatgtcacagctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cataatttgattagttctgcctgtttttgaaaaggaaagaaagcttaatgtcacagctac 428
Query: 61 acaaaaagaatttccatatatatttcctattttaaatgcttataacttaaaatgcataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 acaaaaagaatttccatatatatttcctattttaaatgcttataacttaaaatgcataaa 368
Query: 121 atagtatttacactttcaaagaaagaaagagaagcaccatttatattaagaaatagaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atagtatttacactttcaaagaaagaaagagaagcaccatttatattaagaaatagaggt 308
Query: 181 ctgagattttgccaacagtgttctattattcatgagagtgttctgactttctataaaacc 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctgagattttaccaacagtgttctattattcatgagagtgttctgactttctataaaacc 248
Query: 241 atgataatttccactaacacatttctctaacggtttctgtcattttg 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atgataatttccactaacacatttctctaacggtttctgtcattttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
