Query= MSMg01no195_k22.b1 MSMg01no195_k22.b1 CHROMAT_FILE:
MSMg01no195_k22.b1 PHD_FILE: MSMg01no195_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:58 2005
(245 letters)
>mm_chr15_93101069_93101713
Length = 645
Score = 447 bits (231), Expect = e-130
Identities = 240/245 (97%), Gaps = 4/245 (1%)
Strand = Plus / Plus
Query: 1 gcaactctttcctctgtgctgaggtaccacaccagcgtgtaggtgccaccacaccacccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gcaactctttcctctgtgctgaggtaccacaccagcgtgtaggtgccaccacaccacccc 264
Query: 61 agcttttctatatatgtgtctgtctgtctgtctgtctgtctgtcctttcttcattccctc 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 265 agcttttctatatatgtgtctgtctgtctgtctgtctgtc----ctttcttcattctctc 320
Query: 121 tctgctccagtcagatttctaggaccaagtcatataggatacaacagtcttctttattaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgctccagtcagatttctaggaccaagtcatataggatacaacagtcttctttattaa 380
Query: 181 actgaaaagggtatttgttctttccaaaatgtccataataaccacgagactttaaaacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgaaaagggtatttgttctttccaaaatgtccataataaccacgagactttaaaacct 440
Query: 241 gtata 245
|||||
Sbjct: 441 gtata 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no195_k22.g1 MSMg01no195_k22.g1 CHROMAT_FILE:
MSMg01no195_k22.g1 PHD_FILE: MSMg01no195_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:58 2005
(640 letters)
>mm_chr15_93209140_93210178
Length = 1039
Score = 764 bits (395), Expect = 0.0
Identities = 583/699 (83%), Gaps = 88/699 (12%)
Strand = Plus / Minus
Query: 1 ttttctgcatcaaagccacggtccagtgttacctgagttggggtccccacgagataagcg 60
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 881 ttttctgcatcaaagccacggtccagtgttatctgagttggggtccccatgagataagag 822
Query: 61 aacccagactagggctggggagatggctcagaagttaagagcattgtctgctcttccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 aacccagactagggctggggagatggctcagaagttaagagcattgtctgctcttccaga 762
Query: 121 ggtcctgagttcagttccctgcaaccacatggctgctcacacagccatctataatgagat 180
||| ||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 761 ggtgctgagttcaattccttgcaatcacatggccgctcacacagccatctataatgagat 702
Query: 181 ctggcgccctcttctgacctacatttgtacatgcaggaagaatgctgtatacat------ 234
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 701 ctggcgccctcttctggcctacatgtgtacatgcaggaagaatgctgtatacatgagaga 642
Query: 235 ----------------------------------------------gagagagagagaga 248
||||||||||||||
Sbjct: 641 gagagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 582
Query: 249 gagctgacaactgacatcatttggggctcactcatcccttagaagcattgttgcctcagg 308
||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 581 gagctgacagctgacatcttttgggg----ctcatcccttagaagcattgttgcctcagg 526
Query: 309 agtctatcacaaacaagactatatatacttgtgaaccattaagtaatttaaaagttccct 368
||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 525 agtctctcacagacaagactatatatacttttgaaccattaagtaatttaaaagttccct 466
Query: 369 ttaaccaacaac---aaaaaaggcattttcttttctctctttctttctttctttctttct 425
|||||||||||| |||||||||||||||| |||||||||
Sbjct: 465 ttaaccaacaacaataaaaaaggcattttct--------------------tttctttct 426
Query: 426 ttctttctttctttctttctttctttctgtttgtttttggtgctgggattaaagatgtgt 485
||||||| | ||| ||| ||| || ||||||||||||||||||||||||||| |||||
Sbjct: 425 ttctttc--tgtttgtttgtttgtt--tgtttgtttttggtgctgggattaaaggtgtgt 370
Query: 486 gccatcaccgcccggctctaggatctcattttttaaaattccgaagttaaaatgatgaag 545
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gccaccactgcccggctctaggatctcattttttaaaattccgaagttaaaatgatgaag 310
Query: 546 gaagccatcatacaaaaccagacagccatttgatatactaacagcataaggaggatcctg 605
|| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 309 gatgccatcatacaaaaccagatggcca-ctgatatactaacagcataaggaggatcctg 251
Query: 606 tgccattggg----cttttttttttcatctttatttatt 640
|||||||||| |||||||||| |||||||||||||
Sbjct: 250 tgccattgggttttgtttttttttttatctttatttatt 212
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1039
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1029
Effective search space: 648270
Effective search space used: 648270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
