Query= MSMg01no199_b05.b1 MSMg01no199_b05.b1 CHROMAT_FILE:
MSMg01no199_b05.b1 PHD_FILE: MSMg01no199_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:31 2005
(374 letters)
>mm_chr15_13501244_13502018
Length = 775
Score = 683 bits (353), Expect = 0.0
Identities = 365/371 (98%), Gaps = 5/371 (1%)
Strand = Plus / Plus
Query: 7 gaattctgagtgctta---cccacattcctagtatataataggcactatgtaaactgtct 63
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctgagtgcttattac--acattcctagtatataataggcactatgtaaactgtct 264
Query: 64 tctattttacaattttatatttataccataaaatatgctgttcttgaaattagcattgaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctattttacaattttatatttataccataaaatatgctgttcttgaaattagcattgaa 324
Query: 124 gcaatacattgcaagatggacttctcttataatatgtgaaagtacatataaaaactagac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaatacattgcaagatggacttctcttataatatgtgaaagtacatataaaaactagac 384
Query: 184 agaaaacacatgcaaataagcaaatggttacataaatccagatgtactaaatctcacaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaaaacacatgcaaataagcaaatggttacataaatccagatgtactaaatctcacaga 444
Query: 244 agagaaagtgggggattcccttggatgcattggtacaaaagacaagctcctgagtagtac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agagaaagtgggggattcccttggatgcattggtacaaaagacaagctcctgagtagtac 504
Query: 304 cccaatgactcaggctctaaggtcaacaattgaaaaatggcacatcatgaaactgaaaag 363
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 505 cccaatgactcaggctctaaggtcaacaactgaaaaatggcacatcatgaaactgaaaag 564
Query: 364 cttctgtaagt 374
|||||||||||
Sbjct: 565 cttctgtaagt 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 775
Length adjustment: 9
Effective length of query: 365
Effective length of database: 766
Effective search space: 279590
Effective search space used: 279590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no199_b05.g1 MSMg01no199_b05.g1 CHROMAT_FILE:
MSMg01no199_b05.g1 PHD_FILE: MSMg01no199_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:31 2005
(579 letters)
>mm_chr15_13629182_13630160
Length = 979
Score = 1031 bits (533), Expect = 0.0
Identities = 567/583 (97%), Gaps = 11/583 (1%)
Strand = Plus / Minus
Query: 1 tatacacaagtgcatgtgtgaatgatttttaaactattgatctccatttaatataataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 951 tatacacaagtgcatgtgtgaatgatttttaaactattgatctccatttaatataat-aa 893
Query: 61 aaaacattgcttcttatttgaaatagatataattaaaacaagaaaaaaagaagtagatat 120
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 892 aaaacattgcttcttatttgaaatagatataattaaaacaagaaaaaa--aagtagatat 835
Query: 121 gtatcaagtaaagctattttcctgtgctaattactaatgcttatataatctgaagtcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 gtatcaagtaaagctattttcctgtgctaattactaatgcttatataatctgaagtcatg 775
Query: 181 atttaaaattattatttttaaatatatttatatgctattttaacttttggaaagtaattt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 774 atttaaaattattatttttaaatatatttatatgctattttaacttttggaaagaaattt 715
Query: 241 aaatttatatttaaatatcttttagattcaccaaataaataaaactcattggtcaattca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 aaatttatatttaaatatcttttagattcaccaaataaataaaactcattggtcaattca 655
Query: 301 tgtttccaaaacaatttaattttactttatttttttggctcccc----actctcagccat 356
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 654 tgtttccaaaacaatttaattttactttttttttttggct----ttttactctcagccat 599
Query: 357 gaccttattaacataacaaattaaataacggtctttacagagtttatgaaaacagatact 416
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 598 gaccttattaacataacgaattaaataacggtctttacagagtttatgaaaatagatact 539
Query: 417 tcagtatctacttatctatttcattacgtttaatctataaggtgaacctgatttcatttt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tcagtatctacttatctatttcattacgtttaatctataaggtgaacctgatttcatttt 479
Query: 477 ttaatttttttattctttaatcttattttacagtccagtttttatcgccctccaggtctg 536
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 478 ttaatttttttattctttaatcttattttacagtccagtttttatcaccctccaggtctg 419
Query: 537 ccctctgactattcttcatcccatacctcctccctaccctcac 579
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccctctgactattcttcatcccatacctcctccctaccctcac 376
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
