BAC Information

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BAC

Clone NameMSMg01-202G16
Chromosome15 (Build37)
Map Location 98,719,455 - 98,719,766
singlet/doubletsinglet
Overlap genenone
Upstream geneVdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1
Downstream geneDhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202G16.T7 (MSMg01no202_g16.b1)MSMg01-202G16.TJ (MSMg01no202_g16.g1)
ACCAG387582AG387583
length726737
length of high quality
(start - end)
316 (47 - 362)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no202_g16.b1 PHD_FILE: MSMg01no202_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:13 2005CHROMAT_FILE: MSMg01no202_g16.g1 PHD_FILE: MSMg01no202_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTGGGAACTCACACACATGCTAGAACAGGGCCTACTGTGTACT
AAGTCCTCAATAAATATAAGCTCGCATATCATTACCCTTCCCAGGAGCTC
TGACTTTTTAAATATATAATTTACTTTTATGTTTATTTGTCTCTTGTCTG
CATGTCTGTGTGTGAGGGTGTTGGATCCCTGGAACTGGAATACAGGGAGT
TAAGCCATCATGTAGGTGCTGAGAATTGAACTCAGGACCTCTGGAAGAGC
AGTCAGTGCTCTTAACCACTGTTCCATCTCTCCAGCCACACACCCCCACC
ATTCAGTGTCTCTCTTGTCACCCCCTCCCCATCTTCCCAGATGCCTTGCT
CTTGCCAGAGATGCCCTTCCAGCCCTGCCCACCTATACACCAGTCAACAG
CGCTATTTCAGCTCTTTCCTATTCATAAGATCCTCTCTGTACTGACTTGG
CACATACTGTCAATTGGATTCCTTCTTCCTAGATAATAATATTACTTTAA
TAAGCATATGCATTTATACTCTGTACCGGCTATTCTTGGTTGCCCATTTC
ACTATATTTGCAATGAACTACTTTCCACACATGCACGGCTTATCAGTGTA
CCCCTATCTGTCAGGCTTGACTATCTCTAATCTGCATCCCTCTTTTGTTC
ATTTTTGCTTTTATATTACTATTGTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGACCAACCTGGTACCCTACCCT
CGCATCCACTTCCCTCTGGCCACTTATGCCCCTGTCATCTCTGCTGAGAA
AGCCTACCATGAGCAGCTTTCTGTAGCAGAGATCACCAATGCCTGCTTTG
AGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATG
GCTTGCTGCCTGCTGTACCGTGGTGATGTGGTTCCCAAAGATGTCAATGC
TGCCATTGCCACCATCAAGACCAAGCGCAGCATCCAGTTTGTAGACTGGT
GCCCCACTGGCTTCAAGGTTGCCACCCACTACCAGCCTCCCACTGTGGTA
CCCGGTGGTGACCTGCCCAAGGTGCAGAGAGCTGTGTGCATGCTGAGCAA
CACCACAGCCATTGCTGAGGCCTGGGCTCGCCTAGATCACAAGTTTGATC
TGATGTATGCCAAGCGTGCCTTTGTGCACTGGTATGTGCGTGAGGGCATG
TACCAGACCGATTACTTCTAAAACTTTCACTTCTGCCTCCAAAAACTTCC
CATTTATATTAAACTTATTACTTCCCCTGTATCCCTTTACTTTTTTTTTC
CCTTCCCTTCCCCCCTAATTTTTCCCCTTTTTTTTCCACTTTCACTTTAC
CCCCACCAACCCCTCTCCATCTTCATTCCACATTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_g16.b1 MSMg01no202_g16.b1 CHROMAT_FILE:
MSMg01no202_g16.b1 PHD_FILE: MSMg01no202_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:13 2005
         (316 letters)



>mm_chr15_98719251_98719965
          Length = 715

 Score =  559 bits (289), Expect = e-164
 Identities = 307/313 (98%), Gaps = 2/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgggaactcacacacatgctagaacagggcctactgtgtactaagtcctcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgggaactcacacacatgctagaacagggcctactgtgtactaagtcctcaa 264

                                                                       
Query: 65  taaatataagctcgcatatcattacccttcccaggagctctgactttttaaatatataat 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaatataagct-gcatatcattacccttcccaggagctctgactttttaaatatataat 323

                                                                       
Query: 125 ttacttttatgtttatttgtctcttgtctgcatgtctgtgtgtgagggtgttggatccct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttacttttatgtttatttgtctcttgtctgcatgtctgtgtgtgagggtgttggatccct 383

                                                                       
Query: 185 ggaactggaatacagggag-ttaagccatcatgtaggtgctgagaattgaactcaggacc 243
           |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggaactggaatacagtcaggttaagccatcatgtaggtgctgagaattgaactcaggacc 443

                                                                       
Query: 244 tctggaagagcagtcagtgctcttaaccactgttccatctctccagccacacacccccac 303
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 444 tctggaagagcagtcagtgctcttaaccactgagccatctctccagccacacacccccac 503

                        
Query: 304 cattcagtgtctc 316
           |||||||||||||
Sbjct: 504 cattcagtgtctc 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 715
Length adjustment: 9
Effective length of query: 307
Effective length of database: 706
Effective search space:   216742
Effective search space used:   216742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)