BAC Information

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BAC

Clone NameMSMg01-204J05
Chromosome15 (Build37)
Map Location 101,997,951 - 101,998,175
singlet/doubletsinglet
Overlap genenone
Upstream geneAcvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2
Downstream geneCsad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204J05.T7 (MSMg01no204_j05.b1)MSMg01-204J05.TJ (MSMg01no204_j05.g1)
ACCAG388897AG388898
length766771
length of high quality
(start - end)		236 (126 - 361)299 (75 - 373)
definitionCHROMAT_FILE: MSMg01no204_j05.b1 PHD_FILE: MSMg01no204_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:09 2005CHROMAT_FILE: MSMg01no204_j05.g1 PHD_FILE: MSMg01no204_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCTCTGGCTTCACTCCAGAATCAGTGACTCAGAGAGTCAGAAACTCCG
GTTGAGTTTGGGGTGATTAAGACCCCAACAGTCTACATTACAGAGGCAGC
TCCTTCTTTCCCAGACACCTTTAGTCACGTGTCTTTAGTCACGACCCTGC
TGGGGAGTACACGCTAGGGCTTGAACTTAGGGTTAGTGGAAAGCAAGTCT
GGCGTGGACAGCCGTTTGTCACTGCCATTGAGTGGATGACCTTTGGAGCC
TCTGAGCAGAAGTCAGGGCCATGGTTATGCTGAAAGAAAGTGACTCAGAG
CTGTGGCCCTATTTTTTTTTCCCCCACCCCCGCCTGGCTCCCTATCCACC
AGAAAACATAGTGACCCCCCTCCTCTAAAAAAAAAACATATTATTTTGCA
GTCCGGATCTCTTATATATATCATAGCCATGTATCATGACTAGAACTAAT
CCAAGACCCAAATCTCCATCACTTTCTGGAATTATCTCGCCCCTTTTGCA
CTTCTCCATTTACACTTTCCCCTATTTCCTCCTTTTCTTGTTTTGCTTTT
TACATTTTGCCTATATACTCTTTATCGTCTTTTGCTGCTTTTCATGTTCA
CCCCTTTTTTCCCAGTCACATCCTCTTTCAATATTTTTACCTTTCTTCCC
TCTTTTTCCCATCTTCCCTCATTTTTTTGTTCTTTTTCACACTTTTCCCT
TCACCTCCTCCCTCTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTACAACCCCATGGGACAAGGAATA
GTTGAACATGCTCATCGCACCTTAAAGAATTGGCTTTTTAAGACAAAAGA
GGGTCAGCTATATCCCCCAAGGTCACCAAAGGCCCACCTTGCCTTCACTT
TATTTGTCCTAAATTTCTTGCACACCGATATCAAGGGCCAGTCTGCAGCG
GATCGCCACTGGCATCCAGTTACTTCTAATTCTTATGCATTGGTAAAATG
GAAGGACCCCCTGACTAATGAATGGAAGGGTCCAGATCCAGTTCTAATTT
GGGGTAGGGGCTCAGTTTGTGTTTTTTCACGAGATGAAGATGGAGCGCGG
TGGCTGCCAGAGAGCCCCCCCCCCCAAAAGAACAAAGATTCTGACTCTTC
TGGTAAGTATCATTCTAAAGACTAAAATTCCTTTTGTGCTTAACATTCCG
CTGATAGCAACAGCTCTCAAAGCTGTTATCCAGATACTCTCTGAATCAGC
TCCCGATTGGTAGCCGGATATTATGCACATTTATAAACAATTGCATTATA
AACGTATTTCCATACATTCCATCGTATAGACACTTTTGTCTCTTCTCTCC
TTAATCCTTGTCCATTCGATCATTTTTGGTTATCCTCGTGTCTAATTTAT
ATTTTATCCTATTAATTAAACCACACTAACTTTTAGCATTGCTCAACTTA
CCCTCCATAAGCATATTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_j05.b1 MSMg01no204_j05.b1 CHROMAT_FILE:
MSMg01no204_j05.b1 PHD_FILE: MSMg01no204_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:09 2005
         (236 letters)



>mm_chr15_101997697_101998331
          Length = 635

 Score =  344 bits (178), Expect = 2e-99
 Identities = 217/236 (91%), Gaps = 11/236 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacagtctacattacagaggcagctccttctttcccagacacctttagtcacgtgtctt 60
           |||||||||| |||||||||||||||||||||||||||||||||          ||||||
Sbjct: 479 caacagtctatattacagaggcagctccttctttcccagacacc----------tgtctt 430

                                                                       
Query: 61  tagtcacgaccctgctggggagtacacgctagggcttgaacttagggttagtggaaagca 120
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 429 tagtcaagaccctgctggggagtacacgctagggcttgaactcagggttagtggaaagca 370

                                                                       
Query: 121 agtctggcgtggacagccgtttgtcactgccattgagtggatgacctttggagcctctga 180
           |||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||
Sbjct: 369 agtctggcgtggacagccatttgtcactgccattgagtggatgaccttcagagcctctga 310

                                                                   
Query: 181 gcagaagtcagggccatggttatgctgaaagaaagtgactcagagctgtggcccta 236
           |||||||||||||||||||  ||||||||||||||||||||||| |||||||||||
Sbjct: 309 gcagaagtcagggccatgg-catgctgaaagaaagtgactcagaactgtggcccta 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 635
Length adjustment: 9
Effective length of query: 227
Effective length of database: 626
Effective search space:   142102
Effective search space used:   142102
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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