Query= MSMg01no207_n07.b1 MSMg01no207_n07.b1 CHROMAT_FILE:
MSMg01no207_n07.b1 PHD_FILE: MSMg01no207_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:15 2005
(731 letters)
>mm_chr15_69498182_69499312
Length = 1131
Score = 1344 bits (695), Expect = 0.0
Identities = 722/735 (98%), Gaps = 8/735 (1%)
Strand = Plus / Minus
Query: 1 tcctagagaatttctctttgctttttgttcaggacatctataaaataaac----tcccct 56
|||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct: 931 tcctagagaatttctctttgctttttgttcaggaaatctataaaataaacttttt----t 876
Query: 57 ttcaactcggaaaaaataatgacaaatgggaaaatagtaaaaagtcccatatctgtaggt 116
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 875 ttcaactcggaaaaaataatgacaaatgggaaaatagttaaaagtcccatatctgtaggt 816
Query: 117 cttctcctataaccaatatcagaagaagtaggcatgatgatgaataaattgagaatgagt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 cttctcctataaccaatatcagaagaagtaggcatgatgatgaataaattgagaatgagt 756
Query: 177 ataaaataaatacttattaaataaatcatcctcattgtaatggaaattgatttgatctta 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ataaaataaatacttattaaataaatcatcctcattgtaatggaaattgatttgatctta 696
Query: 237 gagacatgagcctgctgagaagaaaagagcccagaaaatgtcattcccccatcatatccc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gagacatgagcctgctgagaagaaaagagcccagaaaatgtcattcccccatcatatccc 636
Query: 297 tctttctcactttcttctttcttcttattttattccttttcctctaatgactgtgattct 356
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tctctctcactttcttctttcttcttattttattccttttcctctaatgactgtgattct 576
Query: 357 caaatcactttcatcctcaatgctttagtttttactcacagtattttctactgcatacat 416
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 575 caaatcactttcatcctcaatgcctcagtttttactcacagtattttctactgcatacat 516
Query: 417 aacagattgcagcaactgagaaacccaaagtaagaagatgagtgtcttttccaatgtaac 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aacagattgcagcaactgagaaacccaaagtaagaagatgagtgtcttttccaatgtaac 456
Query: 477 ccaggtaaggagacactggaacattcaaagaaaagctatttgtcctaagtttatgcacaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ccaggtaaggagacactggaacattcaaagaaaagctatttgtcctaagtttatgcacaa 396
Query: 537 atgttgcaacatggattttcatcagttagaaaactctataattatgaagtatcaatgaca 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atgttgcaacatggattttcatcagttagaaaactctataattatgaagtatcaatgaca 336
Query: 597 tagtacaaaatgcaccttgtcttatatcaggggaaaacagtagttctgagcttttgtatg 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagtacaaaatgcaccttgtcttatatcaggggaaaacagtagttctgagcttttgtatg 276
Query: 657 caggggcagtgcgaggacacttgattatatcccatcactacccagaatgatatcagatga 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 caggggcagtgcgaggacacttgattatatcccatcactacccagaatgatatcagatga 216
Query: 717 tgtcagatgacagat 731
|||||||||||||||
Sbjct: 215 tgtcagatgacagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 731
Length of database: 1131
Length adjustment: 10
Effective length of query: 721
Effective length of database: 1121
Effective search space: 808241
Effective search space used: 808241
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no207_n07.g1 MSMg01no207_n07.g1 CHROMAT_FILE:
MSMg01no207_n07.g1 PHD_FILE: MSMg01no207_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:16 2005
(644 letters)
>mm_chr15_69421852_69422895
Length = 1044
Score = 1122 bits (580), Expect = 0.0
Identities = 630/650 (96%), Gaps = 6/650 (0%)
Strand = Plus / Plus
Query: 1 atttttatttatatgtatttgctcggcatttcctgtgatctacttcagttgtaaagacac 60
|||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| |
Sbjct: 195 atttttatttatatgtgtttgctcggcatttcctgtgatagacttcagttataaagagag 254
Query: 61 ctataaatgccgtttctgcaggctgtttttactgtactgtgtctgtgttatttccaaagg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttataaatgccgtttctgcaggctgtttttactgtactgtgtctgtgttatttccaaagg 314
Query: 121 gcccactgagacctgattctaaaaggtcttgttgttggtagaggtctgctccttgttagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gcccactgagacctgattctaaaaggtcttgttgttggtagaggtctgctccttgttagc 374
Query: 181 tgcagtccagagagttcttgattggcattctggaattgttccaattaccccaactggtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgcagtccagagagttcttgattggcattctggaattgttccaattaccccaactggtca 434
Query: 241 gggaaggcagctgtgggatatagctcgaatgtgcatccacacacactgtttgtggagtta 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 435 gggaaggcagctgtgggatatagctcgactgtgcatccacacacactgtttgtggagtta 494
Query: 301 ttattcagtcatttattaacttaatatgaat------ccttaatttaaatacaatatcta 354
||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 495 ttattcagtcatttattaacttaatatgaatatgaatccttaatttaaatacaatatcta 554
Query: 355 ttatctattgatccatttctctctctatatatatatcttctgtctatctatctatttatc 414
|||||||||||||||||||| ||||| | | | |||||||||||||||||||||||||||
Sbjct: 555 ttatctattgatccatttctatctctctctctctatcttctgtctatctatctatttatc 614
Query: 415 tacctatctatgcacaagcctaaactgttataagaaatgaatatataatataggatgaaa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tacctatctatgcacaagcctaaactgttataagaaatgaatatataatataggatgaaa 674
Query: 475 atcattattggaacatatattattgtataggttggcaatgaaaataagaaactatcagaa 534
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 675 atcattattggaacatatattattgtataggttgggaatgaaaataagaaactatcagaa 734
Query: 535 actatcactagttcatcaataaaaattaatatccagacttgatggctcatgcctataatt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 actatcactagttcatcaataaaaattaatatccagacttgatggctcatgcctataatt 794
Query: 595 ccaaaatcttgggaaggtgagacaagaaatcatacattaaaggattgcct 644
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ccaaaatcttgggaaggtgagacaagaaatcatacattaaaggattgcct 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
