BAC Information

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BAC

Clone NameMSMg01-209I07
Chromosome15 (Build37)
Map Location 65,069,698 - 65,069,984
singlet/doubletsinglet
Overlap genenone
Upstream geneDdef1, Adcy8, LOC268812, LOC100040790, LOC665836
Downstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209I07.T7 (MSMg01no209_i07.b1)MSMg01-209I07.TJ (MSMg01no209_i07.g1)
ACCAG392015AG392016
length720719
length of high quality
(start - end)
297 (424 - 720)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no209_i07.b1 PHD_FILE: MSMg01no209_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:40 2005CHROMAT_FILE: MSMg01no209_i07.g1 PHD_FILE: MSMg01no209_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAGTTTCCCAGATGGCAAAAGGCAAACATAAGAATCATTTATT
TATTTATTTATTTATTTATCCCATTTATTTTTAATTAGGTATTTATTTCA
TTTATATTTCCAATGCTATCCCAAAAGTCCCCCCTTCCCCCAACTCCCCC
CCCCCCACCTACTCCCACTTCTTGGCCCTGGCAAGTCGACCATCAGTGGA
AAGAGAGGCCCACTGGTTATGCAAACTTTATATTCTGCAGTACAGGGGAA
TGCCAGGCCCAAAACTTATTAATCTTATTAACAGAAAACACTCACCATCA
TCAGAATGCTGTACTCTCACCTCACCAATTCCTGGGCAGCTCAACACACC
CAAAAACCTAGACCCACACCCTAAAAGCATATCTCATGATGATGGTAGAG
GACATCAGAAGGACTTTAATAACTCAAAGAAATACAGAACACTGCTAAAG
AGTTACAAGTCCTTAAAGAAAAACCGGAAAACACAACCAAAACAGGTAGA
AGTCCTTAAAGAAAAACAGGAAAACACATCCAAACAGATGAGGGAAATGA
ACAAAACCATACTAGACCTAAAAAAGGAAGTAGACAGAATAAAAAAAAAA
ACCCAAAGTGAGGCAATGCTGGAGATAGAAACCCTAGGAAAGAAATCTGG
AACCATAGATGCGAGCATCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGATTCTTTATCAAATTTCAGGT
TTCCATATGTGTGTGGATTTTTTTTACTTCATTTTGTTTATTTAATGATT
TATTAAATGCATTAAGCAGCATGAATCCCTAGGAGAATTAGAACCTAGGA
ATAAAATTATTTAAAAATTATGTTTATGTTGTGATTCATAGAATTGCAAA
TTGTCAAAGACATACGGGATCATAGTAAAGCAATACACTGCTTCTTGGAG
CCCACATCTTAACTCCTGGCAATGCAAGTTGAGTTGAAGCATACACATTG
AATGAATTGACCATCAGCACCCGGCTGGCCAGGGGGCAGCATCAACAGAA
AATGCAAATATGGGAGCAACTTTGCAAGTCAATCCAGAGCAGGCCTCATT
CTCATGACAATACACAGTTTCTCTTGTGGAAAAGAGAAAGACATTTTACT
AAGAAACAAAATAAAGGGGAGATAAAACCAATATAGGCCATCTCCAGTGG
ATAAGCATGGCCCCCAGTTGAGGGATGGAGCCACCCACACATCTCAATTT
CTTTTAAATATATTTTTATTAGATATTTTCTTTATCTACATTTCAAATGC
TCCCTATACCCTCCCCCAGCCTGCTCCCCAACCCACCCACTCCTGGTTCC
TAGCACTGGCATTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_i07.g1 MSMg01no209_i07.g1 CHROMAT_FILE:
MSMg01no209_i07.g1 PHD_FILE: MSMg01no209_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:40 2005
         (287 letters)



>mm_chr15_65069498_65070184
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgattctttatcaaatttcaggtttccatatgtgtgtggattttttttacttcattttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgattctttatcaaatttcaggtttccatatgtgtgtggattttttttacttcattttg 260

                                                                       
Query: 61  tttatttaatgatttattaaatgcattaagcagcatgaatccctaggagaattagaacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatttaatgatttattaaatgcattaagcagcatgaatccctaggagaattagaacct 320

                                                                       
Query: 121 aggaataaaattatttaaaaattatgtttatgttgtgattcatagaattgcaaattgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaataaaattatttaaaaattatgtttatgttgtgattcatagaattgcaaattgtca 380

                                                                       
Query: 181 aagacatacgggatcatagtaaagcaatacactgcttcttggagcccacatcttaactcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 aagacatacgggatcatagtaaagcaatacactgcttcttggagcccacatcttatctcc 440

                                                          
Query: 241 tggcaatgcaagttgagttgaagcatacacattgaatgaattgacca 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcaatgcaagttgagttgaagcatacacattgaatgaattgacca 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)