BAC Information

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BAC

Clone NameMSMg01-211E05
Chromosome15 (Build37)
Map Location 70,033,691 - 70,034,092
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383050
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211E05.T7 (MSMg01no211_e05.b1)MSMg01-211E05.TJ (MSMg01no211_e05.g1)
ACCAG393063AG393064
length1,2861,300
length of high quality
(start - end)
406 (43 - 448)---
definitionCHROMAT_FILE: MSMg01no211_e05.b1 PHD_FILE: MSMg01no211_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:15 2005CHROMAT_FILE: MSMg01no211_e05.g1 PHD_FILE: MSMg01no211_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGACTATTGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCTGTATACTCTGCAGATGATTAATGCATCCTCAAAAATATGATCT
TGCTCATTATCAAATTAGTTACTGCCCTAGCAGTAACTTGCAATTATGTT
TTATACTGGGATGTCTCCATTTTTCTGCTCTATTTAACTCTGTAATGCAC
ACAATAGCCATATTGGTCAAAGAGCCAATAAGTTTCATTGAGTCAGGAAA
GAAAAACAGTATAGAGACAGAAAACACCCTATAACTTGAATCTCTAACTA
GGATTACCATCTTATTTTGTGAGATTTATAATTGAGTAACTGCTTACTGA
TTTTATGCTAAAGTTGTGTCTAAGTAAACAAGGAAAAGATAAAACAAAAT
TTTCTGCCCTCAGATAGGTCAGGGCTCAACATGAGGCTAATAATTACACT
GTTTTCCCCCCCCCCACTTCCCAGCGAGGCAGAATGTATAAAAGAAGTCA
TTAAAGCCACATATTCATCACCTGTCACTTGTGTAACTTTGCGCTTCAGA
ATCACTGGAGAAGTGACACCTGCCCAGCTAGGTGTTATGATGATTAACAA
AGACCACCACACAATTAAACTGTCATCACAGCTGGCCACAGGTGGACAGT
AGATTCCAGTCACCTGTTCCTTTGCCTTGAATTGAAAGGCACTTGCTAGT
TTTGAGGTCCACAAATCAGCTAAAGCATGTGAGGAAAAAATTTTTAAAAT
AGAGTGCATCAGTCAAGTAAAATGGCAGACGGTATTACAGCCTATTATTC
CCGAGCCACTTTAGGCTCCATTTATTTGACAGATTGGCACCTTGTAAATA
TGTCAGTTGCCATAATTGGGTTGCCCCAAACCAACTTGCTTTTACACCCA
AGCCAGTTCTAATGCACTTGTAAGCTGCAATCCCCATTTTTCTGTATGTG
TGCGAACTGTAACACAAGTCTCCCAGCTCTTGGTGATTTATTGCAAAGTC
TCATATAATTGCCTAATTCCTAACAGTCCCCTTGGCTTTCCCCTCTTTTT
TAAGTACAATAAATTTTTTTTTCTAACTTGTTCGGCCCTCAATTTTATTT
TGCTATCTATTGTCAAATTTTTTAACAAATAACACCCTTAATATCTTCCC
CTCTTATTACTTTTCNTATCTTTTAATTTTCGCGTCATTACTTACTCACT
CCTACTGTATAATTCTTTTCTCATTTACATATATATTCATATTTTCTCTC
TCCCTATTTTTCTCTCGACTCCTATCCTTTCATTTC
NGGAATATAAAGAAAATATGTGGGGTCTTGNCGNAGAAATTTAGGAGAAA
ATATAGGAGGGAGNNGNNGCCCCATTAAAAGCCCNNNNNNNNNNNNNNNN
NNNGGGNNNNNNNCCTTTAAAAGGGNNNNGNNNNNNNGGGGGGAGGGNNN
NNNNGNNNNGNNNGGGNGNGGGGGGNNGNNNGGNGGGTTTTGGGGGGGGG
GGGNGNNNGNNNNNNGNNNNNNNNGGGGGGGGGGGGGGNGGGGNNGGNNN
GGGGGNGNGGGGGNNGGGNNGGGNNNNNGGNNNGGNGNGGGGGGGGGGGG
GGNNNNGGNNGGGGGNGGNGGNGGGGGGGTTTTTGGGGGGGGGGGGGGGG
GGGGGNGGGGGGGNGGGGNGGGNGGGGGGGGGGGGGGGGGGGGGGGGTTT
TTTTTTTGNGNGGGGGNNNNNNNGGGGGGGGGGGGGAAAAAAANNNNNTT
TTTTTTTTTTCCCCCCCCCCCNNNNNNNNNNNNNNNNAAAAAAAAAAAAA
GGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_e05.b1 MSMg01no211_e05.b1 CHROMAT_FILE:
MSMg01no211_e05.b1 PHD_FILE: MSMg01no211_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:15 2005
         (406 letters)



>mm_chr15_70033487_70034292
          Length = 806

 Score =  723 bits (374), Expect = 0.0
 Identities = 395/402 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactctgtatactctgcagatgattaatgcatcctcaaaaatatgatcttgctca 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaattcactctgtatactatgcagatgattaatgcatcctcaaaaatatgatcttgctca 547

                                                                       
Query: 65  ttatcaaattagttactgccctagcagtaacttgcaattatgttttatactgggatgtct 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttatcaaattagttactgctctagcagtaacttgcaattatgttttatactgggatgtct 487

                                                                       
Query: 125 ccatttttctgctctatttaactctgtaatgcacacaatagccatattggtcaaagagcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ccatttttctgctctatttaactctgtaatgcacacaatagccatattggtcaaagagcc 427

                                                                       
Query: 185 aataagtttcattgagtcaggaaagaaaaacagtatagagacagaaaacaccctataact 244
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 426 agtaagtttcattgagtcaggaaagaaaaacagtgtagagacagaaaacaccctataact 367

                                                                       
Query: 245 tgaatctctaactaggattaccatcttattttgtgagatttataattgagtaactgctta 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgaatctctaactaagattaccatcttattttgtgagatttataattgagtaactgctta 307

                                                                       
Query: 305 ctgattttatgctaaagttgtgtctaagtaaacaaggaaaagataaaacaaaattttctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 306 ctgattttatgctaaagttgtgtctaagtaaacaaggaaaagataaaacaaaagtttctg 247

                                                     
Query: 365 ccctcagataggtcagggctcaacatgaggctaataattaca 406
           ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 246 ccctcagataggtcagggctcaacatgaggctaataaataca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)