BAC Information

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BAC

Clone NameMSMg01-213G08
Chromosome15 (Build37)
Map Location 40,192,922 - 40,193,234
singlet/doubletsinglet
Overlap genenone
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213G08.T7 (MSMg01no213_g08.b1)MSMg01-213G08.TJ (MSMg01no213_g08.g1)
ACCAG394400AG394401
length753742
length of high quality
(start - end)
318 (33 - 350)292 (62 - 353)
definitionCHROMAT_FILE: MSMg01no213_g08.b1 PHD_FILE: MSMg01no213_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:24 2005CHROMAT_FILE: MSMg01no213_g08.g1 PHD_FILE: MSMg01no213_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTTATT
CCATTTTTTTTTTGCTGGTGAGATACTGTCTACCACAGCTATTCCGTTCC
ACGGTTGTATCTTGTCTCTTTGTCGCAAAAGTCACAGTGTCAGACAAACA
AATAAGTAACCAACTTCTAGTGTGCCAGGATGAAGAGCTCTTGCATTAAA
TTGGCATTTGAAGTCGCTGCTCAGTAGCCCCGTGATGTACTTTCCTTCTC
AAAGTCGAGTTGACCTTGAACCTGAACAATGTTTAAAAGGCAAGAGTGAG
GAAATGTTGTCTGTGCTTTTTCAAGAGATATGACTGGAATAGAATTCTTG
TACTGGTTTAACCCCCCCCCCGCCCTTTATATTTCTATGTTTATATTTTA
ATGCTCCGCCCCCCAGCCTACAAAACATCAAACCTGGAACTTTGCCTTCA
GTGTGGCCATATCCCATCCCAAGAGTTTCCCATTCTACCCATAGGGAGGC
ATCTAAGAGCTGACAAGATACAGACTTTAGAGTCTCACTACCTAGGCTCT
GCAAATCCATAAGAATCTCCATAATATTGAATTTCATTAAACCTCTCAGG
TAAATCTTTAAAACCCAACCCGAAAGCCATAAATTGAGCCCAAAGCCTAA
CTTCAATGTCCAACGTTTGAAATCTTCCTTTTAAGGAAATCCCTATAGAA
CTGGATTGGGTCTAAGAAATTCTATTTTCTGTTGAAAGTAATAATTAATT
ATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXACACTTTGACCTGGAATTCAGAGCTGGGCTTCAGGTGTC
TTCCTCGATTACTCACCACACTCTCTGTTTGAGAGTCTTTCACTGAGTCT
GAAGGCCAGCAGTTCACTTAGGGTGATGGGCAGTGAGTTTCAGAGAATCA
TTTGTCTCTGTCCCCAACCGAGTGCTGGGGCCTTGTACTGGCTAGTTTTG
TGTGTCAACTTGACACAGGCTGGAGTTATCACAAAGAAAGGAGCTTCAGT
TGGGGAAATGCCTCCATGAGATCCAGCTGTAAGGCATTTTCTCAGTTAGT
GATCTTTGTGGAAAGCGCCCCTTGTGAGTGGGGCCATCTCTGGGCTGGTA
GTCTTGCCCCCCCCAGAGAACAGGCTGAGGAAGCCAGGGGAAGCTAGCCA
GTAAAGAGCATCCCTCCATGGCTTCTGCATCAGCTCCTGCTTTCTGACCT
GCCTGAGTTCCAGTCCTGACTTCCTTTATTGATGAACAGCAATGTGTAAG
TGTAAGCTGATTAAACCCTTTCCTCCCCAATTGCTTCTTGGTCATGATGT
TTGTGTTAGTATTATTAACCCTGAATAATACCTTTTGTTACCTTCATATT
GGGTTATTCTTGTGACAGCCTGATTTTGTTTTTGAGGAGTACCGTGTTAA
GCACTATGGTTACTTGGGTCCCAAAGGTACCCTTTCTCGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_g08.b1 MSMg01no213_g08.b1 CHROMAT_FILE:
MSMg01no213_g08.b1 PHD_FILE: MSMg01no213_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:24 2005
         (318 letters)



>mm_chr15_40192719_40193434
          Length = 716

 Score =  574 bits (297), Expect = e-168
 Identities = 310/315 (98%), Gaps = 2/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctttattccattttttttttgctggtgagatactgtctaccacagctattcc 63
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattctttttattccattttttttttgctggtgagatactgtctaccacagctattcc 457

                                                                       
Query: 64  gttccacggttgtatcttgtctctttgtcgcaaaagtcacagtgtcagacaaacaaataa 123
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gttc--cggttgtatcttgtctctttgtcgcaaaagtcacagtgtcagacaaacaaataa 399

                                                                       
Query: 124 gtaaccaacttctagtgtgccaggatgaagagctcttgcattaaattggcatttgaagtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtaaccaacttctagtgtgccaggatgaagagctcttgcattaaattggcatttgaagtc 339

                                                                       
Query: 184 gctgctcagtagccccgtgatgtactttccttctcaaagtcgagttgaccttgaacctga 243
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 338 gctgctcagtagccccgtgatgtactttctttctcaaagtcgagttgaccttgaacctga 279

                                                                       
Query: 244 acaatgtttaaaaggcaagagtgaggaaatgttgtctgtgctttttcaagagatatgact 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 278 acaatgtttaaaaggcaagagtgaggaaatgttggctgtgctttttcaagagatatgact 219

                          
Query: 304 ggaatagaattcttg 318
           |||||||||||||||
Sbjct: 218 ggaatagaattcttg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 716
Length adjustment: 9
Effective length of query: 309
Effective length of database: 707
Effective search space:   218463
Effective search space used:   218463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)