BAC Information

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BAC

Clone NameMSMg01-218F02
Chromosome15 (Build37)15 (Build37)
Map Location 69,038,003 - 69,038,25369,120,047 - 69,120,279
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfat1, LOC100041000, EG665945, EG633752, Khdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218F02.T7 (MSMg01no218_f02.b1)MSMg01-218F02.TJ (MSMg01no218_f02.g1)
ACCAG397530AG397531
length643738
length of high quality
(start - end)
255 (61 - 315)233 (129 - 361)
definitionCHROMAT_FILE: MSMg01no218_f02.b1 PHD_FILE: MSMg01no218_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:18 2005CHROMAT_FILE: MSMg01no218_f02.g1 PHD_FILE: MSMg01no218_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:18 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,038,003 - 69,038,253)(69,120,047 - 69,120,279)
sequence
TAATACAANNNTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCCAGGAGATCAGTCCTTAGGTGACTATTATG
GATACTGGCTCAGACAAGTATAATATATTTTTTCCTCTTTCCCTACCTCA
TCATTCTACTGTCTCCTGTGAACACCTTTGGAATTGTTCCTGGAAATTTA
TGTCTTATGCTTTGCTTTTATGGTAATCTATAGTAAAACTGCATAGATTT
TACGAAAGTGAAATGGTTACTTCCTCTTTATGTCTCACAGACTTCTATCC
ACCAAATTTTGTATTGTAATAATGCAAGAGAAAGTTCAGTCATTAAATCT
CTCAAAATGTCCGAAAAATGTATCCCTTTTTTTTTTTTTTTACCCCCACA
CCCCCCACCTAATGAAAAAAGGTTTTTCCGTAAGATAACTGGTGGGGTTT
CCTCTTCCCCCACCCATTTTTAAAAAAAAAAAAAAAACGTTTAACGGGCC
CCCTTTGGGATTAAATGCCCACAATTTTTAATTGGGGTAAGGCGCGGTAA
GCCAATTTTCTTTTCCCAAGTCGGTGGAAAAAGAGGGCCCAGTAAAAAGG
GGGCTATCTTTTTCTCCTTTGATAAAAAAAAAAACTGTTTCAN
GCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCTTTCCACTTTTCATACCTAAT
GTTCAAACTTCATCCAAATTGATGCCCATGGTGTGGGTACTCTGGGATGT
AAGCATGTTCTTAAAGTAAGAAGGAATGAGGAGGAAACAGAGCAGCATGT
ATGAAAGACCACAGACTTGGAAGTAAGATAATTGACTATCTGCCTCTTTC
CAGAAGGTCCTCCTTATCATTGATCTCCTCAGTTAGACACTGATGACAAG
ATATATCTGTGTAAGTTTCTGCATATTAAGAAAAGATAATGCACAGAAAA
TGTTCCCTCTCTTTCTAATTTGCCCCTCCTCTCTCCCAAAGATGAATGAA
TTCTTCTCCTCCTTCTCTCCTCTTCCAATCCAAACATCTCCTATATGGAA
GATATTCTTGTATATGGAAGTCATATAAAGTCAATAGCCTCAAATTCAGT
CTCATGTCTGGATGGGTGTTCTATGAGATATTTTGTGGGGAGACACAACG
CTCAACTCTACTCATGCCGGAAAGATAACATGTGATAAAACAAGGTAATG
CTGGAAATCCAACATGGTAAACCAGATGTTATTATGATTAGCAGGGGTGA
GTGAGCATACTGGTAGAAGCAGGCATGACTCCCAAACCAGCTGTGCCACT
TGAAAGCCCTTGTCGACACAGATGAACCATAAAGATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_f02.b1 MSMg01no218_f02.b1 CHROMAT_FILE:
MSMg01no218_f02.b1 PHD_FILE: MSMg01no218_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:18 2005
         (255 letters)



>mm_chr15_69037799_69038453
          Length = 655

 Score =  447 bits (231), Expect = e-130
 Identities = 246/251 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggagatcagtccttaggtgactattatggatactggctcagacaagtataat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaattccaggagatcagtccttaggtgactattatggatactggctcagacaagtataat 396

                                                                       
Query: 65  atattttttcctctttccctacctcatcattctactgtctcctgtgaacacctttggaat 124
           || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 395 atgttttttcctctttccctacctcaccattctactgtctcctgtgaacacctttggaat 336

                                                                       
Query: 125 tgttcctggaaatttatgtcttatgctttgcttttatggtaatctatagtaaaactgcat 184
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 335 tgttcctggaaatttatgttttatgctttgcttttatggtaatctatagtaaaactccat 276

                                                                       
Query: 185 agattttacgaaagtgaaatggttacttcctctttatgtctcacagacttctatccacca 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 275 agattttacgaaagtgaaatggttacttcctctttatgtctcacagacttctatccacaa 216

                      
Query: 245 aattttgtatt 255
           |||||||||||
Sbjct: 215 aattttgtatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no218_f02.g1 MSMg01no218_f02.g1 CHROMAT_FILE:
MSMg01no218_f02.g1 PHD_FILE: MSMg01no218_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:18 2005
         (233 letters)



>mm_chr15_69119847_69120479
          Length = 633

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtgtgggtactctgggatgtaagcatgttcttaaagtaagaaggaatgaggaggaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tggtgtgggtactctgggatgtaagcatgttcttaaagtaagaaggaatgaggaggaaac 374

                                                                       
Query: 61  agagcagcatgtatgaaagaccacagacttggaagtaagataattgactatctgcctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agagcagcatgtatgaaagaccacagacttggaagtaagataattgactatctgcctctt 314

                                                                       
Query: 121 tccagaaggtcctccttatcattgatctcctcagttagacactgatgacaagatatatct 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 313 tccagaaggtcctccttatcattgatcccctcagttagacactgatgacaagatatatct 254

                                                                
Query: 181 gtgtaagtttctgcatattaagaaaagataatgcacagaaaatgttccctctc 233
           |||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gtgtgaggttctgcatattaagaaaagataatgcacagaaaatgttccctctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)