BAC Information

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BAC

Clone NameMSMg01-218J11
Chromosome15 (Build37)
Map Location 17,184,762 - 17,185,046
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040119, Cdh9
Downstream geneLOC100040162, LOC666835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218J11.T7 (MSMg01no218_j11.b1)MSMg01-218J11.TJ (MSMg01no218_j11.g1)
ACCAG397706AG397707
length780729
length of high quality
(start - end)
321 (44 - 364)285 (71 - 355)
definitionCHROMAT_FILE: MSMg01no218_j11.b1 PHD_FILE: MSMg01no218_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:39 2005CHROMAT_FILE: MSMg01no218_j11.g1 PHD_FILE: MSMg01no218_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTGGAATTGGTGGGGTCTGGAAGGATTAAAGTAGCCAGAAGGGTTA
AGGATACCATAAGAGAACCTACAGAATCAACTAACCTGAAATCACAGGGC
CTCACAGAAACTGAACTGCCACCTAAAGAGTAAGTATATATGTAATGACT
TTGTAGTGAAGTCTTCATGTGGAACTCCTAAAGTAGGATCAGGCCTGTCA
GTGACTATAATGCCTGTGTATGTACCCTTTACCCATAACTGTGCTGGCTT
GTATAGTCTAAATAGAAGGATATATGCCTAGTCCTACTGCAACTTTTTAT
GCCAAGACTGTTTGTTATCCATCGCCCCCCCTCCTCTATTCTGAAGAGAA
TGAGGTGGGTGATGGGGCCACACCAAAAAAAAAAAAAAAATTTGTGTTGG
TGGTTTCTCTCTCTCTTATCCTATTTCCCACTTTTTCCTTCCTTCCCTTT
TTTCCCTTTCCATATCATTTTTTTACTTTACTACCTACTTTTTCATCTTC
TCAATCTTCTTCCTTTTTTTCTTTACCCTTTTAATTCCCTACTATCTATC
TTTACTTCCTTTTTTCCATTCTCAACTTTACCTTTTATTTTTCTTTTAAT
TTATTATTTCTCCTCTCCCTCTCTTTCATTTCTTTCTTCCTTTTCTCATC
ATTCCCTAAAATCCACCCTCTCTCTTACTGCCTTATCCCTTTATCTTATT
CTTTTTCTCCCCCATCCTCTCTACTTTTAC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGGTTCGCCGTGATACTGTAAAGGTTGGTG
GCATTTTATTTCTGGTCATGTTCAGTTTGGGTATATTCTGATTAATCAAA
ATTCCTCTTATGTTTTGTGCCTTTGATCTGTTCTATTCATGAATAAAATA
TCTAAAGATACAGAAATTATTCATGCTTATATGATGAAATGTGTCTTTAA
GAAACATAACACAGGTTGGGAGTAGTGGGGCAGGCCTTTTATTCTAGCTC
TTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGTCAGCCTGATTTG
AATAGGGATTCTATTATTCGCTGGCGGTCATGGAGACATTGTTTGGAAAG
AAAGAAAGAAAGATCCACCGAAAGAAAGAAAGAAAGAATGATTGAGAGAA
AGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGGTATTTTTTCTTCCCTCTTCCTTTTTTCTCCTTTTTTT
TCTTCTCCCTTATAATATTTTTATTTCAACCTTATCATAAATATCCTTTA
CCCATTTCTTTTACGTTCCATCCACTTCTTTGCTCTTTACTCATTACCCT
TATTTATAATCCTTACTCCAACTAATACTATTTCTCTCCTTATTCTTATT
TATTTATATCTTCTTTCTTATCATTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_j11.g1 MSMg01no218_j11.g1 CHROMAT_FILE:
MSMg01no218_j11.g1 PHD_FILE: MSMg01no218_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:39 2005
         (285 letters)



>mm_chr15_17184654_17185338
          Length = 685

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttcgccgtgatactgtaaaggttggtggcattttatttctggtcatgttcagtttgg 60
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 393 aggttcgccgtgatactgtaaaggttggtggcgttttatttctgatcatgttcagtttgg 334

                                                                       
Query: 61  gtatattctgattaatcaaaattcctcttatgttttgtgcctttgatctgttctattcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtatattctgattaatcaaaattcctcttatgttttgtgcctttgatctgttctattcat 274

                                                                       
Query: 121 gaataaaatatctaaagatacagaaattattcatgcttatatgatgaaatgtgtctttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gaataaaatatctaaagatacagaaattattcatgcttatatgatgaaatgtgtctttaa 214

                                                                       
Query: 181 gaaacataacacaggttgggagtagtggggcaggccttttattctagctcttgggaggca 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaaacataacacaagttgggagtagtggggcaggccttttattctagctcttgggaggca 154

                                                        
Query: 241 gaggcaggtggatttctgagttcaaggtcagcctgatttgaatag 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gaggcaggtggatttctgagttcaaggtcagcctgatttgaatag 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)