BAC Information

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BAC

Clone NameMSMg01-232P08
Chromosome15 (Build37)
Map Location 9,846,865 - 9,847,174
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
Downstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232P08.T7 (MSMg01no232_p08.b1)MSMg01-232P08.TJ (MSMg01no232_p08.g1)
ACCAG399306AG399307
length737740
length of high quality
(start - end)
314 (44 - 357)290 (72 - 361)
definitionCHROMAT_FILE: MSMg01no232_p08.b1 PHD_FILE: MSMg01no232_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:34 2005CHROMAT_FILE: MSMg01no232_p08.g1 PHD_FILE: MSMg01no232_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGCTGGAAGAAAGTTGTTAATGTCAGAACTGTGCATAGTAGCAGCAG
ATTTCCCCCAATTAAAATATTTTGCTATGAAAGATTTTTTCCACAATTTT
CAACCATGGAATCCTTAATATTGCTGTTTTAATTGTGGTAATTTATTGAC
TTTGCTTTTAAAATTAAATAAAAGCACATTTGAAGTCAAGGTAAATATGA
CAAAATCACCAGCAATTATATCTGCAAAATACAGAAATTATAATCAGGAA
AGCATAAATTTTTATAGAAAATGAATCATTTTTTTCATGGTTGAGAACAC
ACGTAGTAAATTTTTTATTCACCCACCACCTATTTCAGCAAATATAAACA
TTCTATAAAATTTACCCCCGCCCTGAAAACTACATGTATGCAATATTTCT
TAGTGCTGTCTGATAGATTTGTGTGCAATTATTTGAATACAGGAAGATTA
AGAAAATTTTAATGTTTTTCCTGTTATAAACATTGAAATAATTTACATAG
GTACTCCTTGGGATAAGTAGAACACCACACTTCTGGTTCTAATCCCTCAA
TTTTGTGCCATATGCTCTGGAATCACAGTTTATGTTGCTCCATCCTGAGC
AACTACTAAGAACTTAAGTCTGAATCCAGACAGAAATAGTTCACTGGACC
TATTAAAAACAACAAAGAGAGCTTGCTTGCCAACATN
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTCTCCAATACTTTTAACATGAAG
GAGTGTTGTATTTTGTCACACCGCTTTTTCAGCATCTAAGGAGATGATCA
TGTGATTTTTTTCTTTGAGTTTGTTTATATAATGGATTGCATTAATAGAT
TTTCATATATTAAACCAACCTTGCATCCCAGGGATGAAGCCTACTTGATT
GTGGTGAGTGATGGTTTTGATGTGCTCTTGGATTCAGTTTGCAAGAATTT
TATTGAGTATTTTTGCATTATTATTCATAAGCGAGATTGGTCTGAAGTTC
TCTTTTTTGTTTGTTTCCCTCGCGCGGCCTTAGGTATCAGAGTAATTGTG
GCTTCATAGAATGACCCCCCCAGAGTTCCTTCTGTTTCTATTTTATGGAC
CAGTTTGAGGAAAATTGGTATCAGGTTTTCTATGACGGTCTGGAAGAACT
CTGCAATATTTCCATCTGACCCTGGGCTCTTTTGGCTGAGAAATTTTTTT
TATTACGTGTTTATTTCATTTATATTTCCAATGCTATCTCATAAGTCCCA
CACACGTTACCCCATTCACTCCCCCACCCTCCCATTTCCACTTCCTGACC
CCTGTTGTTTGTTTCGTCAATTTTCTAATGATTCCCTCTATCTCCTTGTG
TGATATGCTTTTTGTTTACACAGTTTACTCCCCGATCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_p08.b1 MSMg01no232_p08.b1 CHROMAT_FILE:
MSMg01no232_p08.b1 PHD_FILE: MSMg01no232_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:34 2005
         (314 letters)



>mm_chr15_9846661_9847374
          Length = 714

 Score =  561 bits (290), Expect = e-164
 Identities = 305/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgctggaagaaagttgttaatgtcagaactgtgcatagtagcagcagatttccc 64
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattctgctggaagaaagttgttaatgtcagaactgtgcatagtaacagcagatttccc 264

                                                                       
Query: 65  ccaattaaaatattttgctatgaaagattttttccacaattttcaaccatggaatcctta 124
           | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 ctaattaaaatattttgctatgaaagatattttccacaattttcaaccatggaatcctta 324

                                                                       
Query: 125 atattgctgttttaattgtggtaatttattgactttgcttttaaaattaaataaaagcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 325 atattgctgttttaattgtggtaatttattgactttgcttttaaaattaaataaaagcat 384

                                                                       
Query: 185 atttgaagtcaaggtaaatatgacaaaatcaccagcaattatatctgcaaaatacagaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttgaagtcaaggtaaatatgacaaaatcaccagcaattatatctgcaaaatacagaaa 444

                                                                       
Query: 245 ttataatcaggaaagcataaatttttatagaaaatgaatcatttttttcatggttgagaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttataatcaggaaagcataaatttttatagaaaatgaatcatttttttcatggttgagaa 504

                     
Query: 305 cacacgtagt 314
           || |||||||
Sbjct: 505 catacgtagt 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)