Query= MSMg01no233_h10.b1 MSMg01no233_h10.b1 CHROMAT_FILE:
MSMg01no233_h10.b1 PHD_FILE: MSMg01no233_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:10 2005
(658 letters)
>mm_chr15_42667207_42668264
Length = 1058
Score = 1160 bits (600), Expect = 0.0
Identities = 645/670 (96%), Gaps = 16/670 (2%)
Strand = Plus / Plus
Query: 5 gaattctgctttttgcacagcaacattcttttggaccacttagtgggccggtggcaattt 64
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 189 gaattctgctttctgcacagcaacattcttctggaccacttagtgggccggtggcaattt 248
Query: 65 ttatttgatttaatcaatctaactatgttatgcaattatattctgtaaacttgaacaaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttatttgatttaatcaatctaactatgttatgcaattatattctgtaaacttgaacaaga 308
Query: 125 aaggggaaaacttcacctctgtaaaatgctatcatagcgggcatcctgtatcctaagggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aaggggaaaacttcacctctgtaaaatgctatcatagcgggcatcctgtatcctaagggg 368
Query: 185 ggcttttcctgctcctgtaatctagcggaatccacaagatgactcctccttgt------- 237
||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 369 ggctttttctgctcctgtaatctagtggaatccacaagatgactcctccttgtcactgaa 428
Query: 238 ---------ttctttgtggactagttcattccaatggtaaatctgaaacagtggagtgag 288
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaccagagtttctttgtggactagttcattccaatggtaaatctgaaacagtggagtgag 488
Query: 289 actctgaccaaagataagcatctctgtgcttgtttacagagaactcacacagagaaattt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 actctgaccaaagataagcatctctgtgcttgtttacagagaactcacacagagaaattt 548
Query: 349 acttaaggagaaagggctggcagtacagcctttggaaatggcagaaactaatgcttttga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 549 acttaaggagaaagggctggcagtacagcctttggaaatggcagaaactaatgattttga 608
Query: 409 tgccagactctcctatttaccagaaagaaaagcactcttgtgtaagtgttgagtttaaga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgccagactctcctatttaccagaaagaaaagcactcttgtgtaagtgttgagtttaaga 668
Query: 469 ttgtaagattgaagttctaggtcagtgtgcagttccccatacttggcttgtttgttcctc 528
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ttgtgagattgaagttctaggtcagtgtgcagttccccatacttggcttgtttgttcctc 728
Query: 529 ctgtgagacttctgcagatgtgccctataaatctaggtccctccttatctgataatgccc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ctgtgagacttctgcagatgtgccctataaatctaggtccctccttatctgataatgccc 788
Query: 589 atcggcctacaataaatgagacatgacttgagttttatgcatagtaactagagacaaggt 648
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 atcggcctataataattgagacatgacttgagttttatgcatagtaactagagacaaggt 848
Query: 649 caaaatcatg 658
|||||||||
Sbjct: 849 taaaatcatg 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_h10.g1 MSMg01no233_h10.g1 CHROMAT_FILE:
MSMg01no233_h10.g1 PHD_FILE: MSMg01no233_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:10 2005
(287 letters)
>mm_chr15_42832880_42833566
Length = 687
Score = 542 bits (280), Expect = e-158
Identities = 283/284 (99%)
Strand = Plus / Minus
Query: 1 cttacatttatgcctactcgttgcaagttctgacatttcctggagaattctgcagagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cttacatttatgcctactcgttgcaagttctgacatttcctggagaattctgcagagata 425
Query: 61 acaccaaagcagaaaagagtatttgtggaattagctatgagactctcagagtcaagaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 acaccaaagcagaaaagagtatttgtggaattagctatgagactctcagagtcaagaggg 365
Query: 121 gtgggccatatacatgcagtgctcagtcattcttcaagtaagtcataatgggagacattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gtgggccatatacatgcagtgctcagtcattcttcaagtaagtcataatgggagacattt 305
Query: 181 ttttgttataactagatgacaagttatattgactgacataattctttctgttgcttttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttttgttataactagatgacaagttatattgactgacataattctttctgttgcttttaa 245
Query: 241 agcaaggcaccttaatatacatagccatgacattttataatttg 284
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agcacggcaccttaatatacatagccatgacattttataatttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
