BAC Information

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BAC

Clone NameMSMg01-233P14
Chromosome15 (Build37)
Map Location 81,242,878 - 81,243,160
singlet/doubletsinglet
Overlap geneXpnpep3
Upstream geneEnthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Dnajb7
Downstream geneRbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233P14.T7 (MSMg01no233_p14.b1)MSMg01-233P14.TJ (MSMg01no233_p14.g1)
ACCAG400007AG400008
length711722
length of high quality
(start - end)
291 (72 - 362)284 (78 - 361)
definitionCHROMAT_FILE: MSMg01no233_p14.b1 PHD_FILE: MSMg01no233_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:48 2005CHROMAT_FILE: MSMg01no233_p14.g1 PHD_FILE: MSMg01no233_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCTTTATCCAATTGACAAGGACCAGCTTGACATCACAGGGTAAA
CCAAGATAGGGTATAGAGTCTGCTGATCAGGGCCAAAAGCTGCTTCCTTT
TGGCCATTTAATCTCTCTTGTTATTCTGGGGCCAAAAAACTACCAGCTTC
TGGCTAGTTAGCTCTTTCTTGCAATGCAGGGCCAAAACCTGACAGCAGAG
AAAAAGAAACTTGGTTACCTGACTAATTTTCTCTTTGACTCAGGCCTCTG
GCTGGCCAGGTGAGAGGCTTGTAATTACTTAACTCTCAGTAAGAGAGAGA
GAAAAGAAAATATTTTATGAACGACCCACACACATAGACAACATGCATAC
TGGAGGAAGCTGAGGAGGCCCGCACTACCATTTTACTTTTGTTCTTAGTT
TTTATGCTTTTTCAGAATAATTGATCACATGGGTTTCTAAGCATTTTTCT
AAGTTCATGGCAAGTTTAAAGCAACAGTTCATGTTATAGATTGAAAAGAC
TTAACGAGGTACAGCATTATTGTTTATATGTCTTTCCATTAAGACTAGTA
CCTACCTGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC
TTCCGAACGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGATCACAAC
CATCCGTAACA
NCACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTTAGCAAGTCTCTGTCTG
AAAATGCAGTGAAATGCAACTGAAGTAGAGACACTTGTTGTAAACCTCTA
GCTCCCATGCATGCGTGCACACTTGCATGCACATACGTACTCACAAACTC
TCAAACACCACACACAACTCCTATCAAATACGTGCCATCAAGAATGCTTC
ATAGGCCCTAAAGAAATCTTCATCTTGACCTGACTTACGATACTCTACTT
TTGAACTGAATATACGTCGAAGACTTTACAATCAGTACTTATTGTGTCAG
GATTAAATGATATCTGTTTTGACCCTCCCCCCCAAGAATAAGTCCAAAGA
TTTTTAATTTAATCCTAAATCCGAATCTCATTTTGACCAATGCTATATGA
CCTTAAACAAATTGTTTCTCAATCTCTGGTCCTGATAACTCATTTATTTG
GGGGTTTTTGAGACAGGGTCTCACTGTGTAGCCATGGCTGTCATAGACCT
CACTATGTAGACCAGTCAGGCCTTGAACTTACAGAGATCCACTAAGCCAT
ACAAGACTTTTTAAGTCTGCTAGCAGAGTAACCTAGCGTTGCACTGTATG
TTCTCACGTGTTCTCTCTGCCTCCTGCTGCTTCCCTACATTCAAGAACAC
AAGTGCCTGCCTCTAGGTATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_p14.g1 MSMg01no233_p14.g1 CHROMAT_FILE:
MSMg01no233_p14.g1 PHD_FILE: MSMg01no233_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:48 2005
         (284 letters)



>mm_chr15_81242678_81243361
          Length = 684

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggttagcaagtctctgtctgaaaatgcagtgaaatgcaactgaagtagagacacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggttagcaagtctctgtctgaaaatgcagtgaaatgcaactgaagtagagacacttg 260

                                                                       
Query: 61  ttgtaaacctctagctcccatgcatgcgtgcacacttgcatgcacatacgtactcacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaaacctctagctcccatgcatgcgtgcacacttgcatgcacatacgtactcacaaa 320

                                                                       
Query: 121 ctctcaaacaccacacacaactcctatcaaatacgtgccatcaagaatgcttcataggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcaaacaccacacacaactcctatcaaatacgtgccatcaagaatgcttcataggcc 380

                                                                       
Query: 181 ctaaagaaatcttcatcttgacctgacttacgatactctacttttgaactgaatatacgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaaagaaatcttcatcttgacctgacttacgatactctacttttgaactgaatatacgt 440

                                                      
Query: 241 cgaagactttacaatcagtacttattgtgtcaggattaaatga 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgaagactttacaatcagtacttattgtgtcaggattaaatga 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)