BAC Information

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BAC

Clone NameMSMg01-234G15
Chromosome15 (Build37)
Map Location 45,347,768 - 45,348,062
singlet/doubletsinglet
Overlap genenone
Upstream genePkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
Downstream geneLOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234G15.T7 (MSMg01no234_g15.b1)MSMg01-234G15.TJ (MSMg01no234_g15.g1)
ACCAG400315AG400316
length746744
length of high quality
(start - end)
244 (131 - 374)297 (76 - 372)
definitionCHROMAT_FILE: MSMg01no234_g15.b1 PHD_FILE: MSMg01no234_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:23 2005CHROMAT_FILE: MSMg01no234_g15.g1 PHD_FILE: MSMg01no234_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCCTTGTCTTAGTCTGGGTTTCTATTCCTGCACAAACATCATGAC
CAAGAAGCAAGTTGGGGAGGATTGGCCCTATTCAGCTTACATTTCCATAC
TGTTGTTCATCATCAAGGAAGTCAGGACTGGAACTCAAACAGGTCAGGAA
GCAGGAGCTGATGCAGAGGCCATGGAGCGATGCTCTTTACTGTCTTGCTT
CCACTGGCTTACTCAGCCTGCTCTCTTATAAAACCAAGACTATCAGCCCA
GAGATGGCACGACCCACAAGGGGACCTTCCTCCTTGATCACTAATTGAGA
AATTGCTTTGCCGCTGGATCTTGTGGAGGCACTTCTCCAACTGAAGCTCC
TTTCTCTGTGATAACTCCAGCCTGTGTCAAGTTGACACAAAACTAGCCAG
TACAACCCTTGACAAAATTAGTAAATTCTAAGTTATATAAAATATATTTT
AATTATTTTATTTACATTCTAGCCATTTTCCCCCTCTAGGTCCTCTTCCC
TACAGTTCCTCATCCCCCTTGCCTCCAAGAGGGTGATTCCTACCACCAGA
CCTCCCCCTTTCCTGGGGCTTCAAGTCTCTCCAGGATTTGACACATCTTC
TCTCTGCTACATATGTTGAGAGGACTCAGGCTGACCCATGTATACTGCGA
GGTTGGTGACTCAGTTTCTGGGATATTCCAGGGGTCAAGATTAGCT
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGGACATTAGCTAAATAGAAC
CCCGAATTTCTTTTTTACAAATTTCATTCCTATTAAGTGTCATCCAGATT
CTCACCATTGAATCAAAGGTTTGCTTTATGAAAATGTGGGAACAAATGTC
TATGTGATCCATGTGGTATGTCTATATTTAGAACCATGGAGCATATTAAT
TAGAGTTGGGTATTTATGAACTTAAGCAACAGGCTAAATCAAGTTGACAG
ACAATTAAATGAAGGATCAAGGAATGATCATAGAAATGAATTTGTATGAC
AGATATGAGTTATTTTTATATCTATGTGGACACCCCCCCTTTTAATCAAA
ACAGCTGTAACTAGCAGCTGATATTTAAAATCAAAATTTCTAGCCATACC
TGCTCACAGCTTACTATATTAATTATAATAATCTTCACATCACAACATTT
TAGACATTAAACATGGCACAGAATGTAAGATAAACTGCTGACTGCTAATT
CAGATGATAAAAGTCACAATAAGAGCTAAAAAATAAAATGTTCAGGGGCC
ATATAAATTGTCTCTATCTATCTATCTATCTATCTATCTATCTATCTATC
TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCGC
TGAATATCATGTCTATTTGACTGACCGTTAATTATTACCCAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_g15.g1 MSMg01no234_g15.g1 CHROMAT_FILE:
MSMg01no234_g15.g1 PHD_FILE: MSMg01no234_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:23 2005
         (297 letters)



>mm_chr15_45347568_45348264
          Length = 697

 Score =  532 bits (275), Expect = e-155
 Identities = 290/295 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaaggacattagctaaatagaaccccgaatttcttttttacaaatttcattcctatta 60
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||
Sbjct: 495 agtaaggacattagctaaatagaaccccgaatttctttttttcaaatttcatttttatta 436

                                                                       
Query: 61  agtgtcatccagattctcaccattgaatcaaaggtttgctttatgaaaatgtgggaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agtgtcatccagattctcaccattgaatcaaaggtttgctttatgaaaatgtgggaacaa 376

                                                                       
Query: 121 atgtctatgtgatccatgtggtatgtctatatttagaaccatggagcatattaattagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atgtctatgtgatccatgtggtatgtctatatttagaaccatggagcatattaattagag 316

                                                                       
Query: 181 ttgggtatttatgaacttaagcaacaggctaaatcaagttgacagacaattaaatgaagg 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 315 ttgggtatttatgaacttaagcaacaggctaaatcaggttgacagacaattaaatgaagg 256

                                                                  
Query: 241 atcaaggaatgatcatagaaatgaatttgtatgacagatatgagttatttttata 295
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 255 atcaaggaatgatcatataaatgaatttgtatgacagatatgagttatttttata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)