BAC Information

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BAC

Clone NameMSMg01-237M21
Chromosome15 (Build37)
Map Location 71,563,804 - 71,719,740
singlet/doubletdoublet
Overlap geneLOC100040847, Col22a1
Upstream geneLOC383051, 1700010C24Rik
Downstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237M21.T7 (MSMg01no237_m21.b1)MSMg01-237M21.TJ (MSMg01no237_m21.g1)
ACCAG402647AG402648
length750774
length of high quality
(start - end)
235 (121 - 355)191 (131 - 321)
definitionCHROMAT_FILE: MSMg01no237_m21.b1 PHD_FILE: MSMg01no237_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:43 2005CHROMAT_FILE: MSMg01no237_m21.g1 PHD_FILE: MSMg01no237_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,563,804 - 71,564,036)(71,719,550 - 71,719,740)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACACG
AATTTCCCAGATACTTGTATAGGTCAGGATACTTGTATAAGGGTATAGGT
CAGGATTTTTTCAACTCAATCCTTGCTCCTTCCCATACCATACGCACATT
AGAGTGCCTCTTGGGACTTGCTTCCATTTTCATTTGGTGTTTCAGTTCAC
ACATCCAATGCAGTACTCTCACAGCATTCTTAAGAGTTGCATTCAGACAA
TACTTGGCCCCAAGGGGCTGTCTGTAAACTGTACAATGTCCAACAGCACT
CCAGACCACATCCTATCTTATGCGAGGAGATCATCCGCCTCTATCCTACT
CTCTATATTTTGACAACTGCCCCAAGAATCTAACTGAGCAATCAGCAGCA
ATCCAAAGAGTAGAAGTGATGTGACACCTCCCATGTGTACAAAAAAGGCT
TACGATCACCATACCTGAATTCAAATATTTTCTCTCTTATCCCCGTGACT
TATAGAAAAATCCTAAATAATTGTAACTGGCAGGCTGGGTTAGTTTCCTA
TAGTCCACTCTGAATGTCCCCATTAGATTGTCTCATATGGACAAGACTGA
GGGGCACTTTCTTTATTAATGACTATTGCAGGATGGCCCAAACCACTGTG
GTCCTGTCTCGAGGGGTCTAAGAACGAGCAAGCCATGGTGCATATGCCAG
TAAGCAGTGTGTTTCATGGGGTCTCTACTTCAGTTGCTACCTCCAGGTCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGTGGAGGNNG
AACTATAGAAGGATCACAGGACTTATTGAGATGGNGATGTACTACCCACA
GCAGTAACACTGATTAAATTTTTAGCCAAGTACTGTTTTTCACCCAGCCT
AGCCAAGGGCTAAGTCTTCTCTTGGGGTGTGTGTGTGTTGGGGTGGGGTC
CTGGTCTAGTCAGGGATAACAATACTATCCTGGTATTGCTCTGTCTTTCC
CCAAAGTCTTGGCATACATGGTGAGTAGGGATAGAGAGGGAAGATGATGT
TAGGAAAATGTTTGGGGCCAGTTTTTTTTTTGGGNANCANGNCCAGCCAC
CAAACTCAAGTGTTTTTTTTGCTTCCCCCCCCCCCCACAANATCAAATTA
GGTGGAGACCCGAGAGGAAGACGACAAAGAAAAAAACAAAAAAAGGGTGT
GGGGGCGGTCACCAGCTACTACAGTCCTAAAAAGGAAACATCCCCTTGAG
TCATTAGGGGAAAACTCATAGTTCTCTCTAATCAGAATCCCACTTTATTT
ATTCAAGTTTACCTGCATGGATAGCACCTTATTATTTTTAATTGTGGCAT
ATCTATTGGGTACACTGTTAGATATTATTATTGATAGTGTTATTTTTTTT
GGTTACTTTCTTTTCTCGAATCTTTTTTTTTTTGGGAAATTGTATTCGTT
TTTATATCGTTGGGTGTTTGTAAATGTGTTGTATAGGGTCGTATGGGTGT
CCAGTTTAATCTGTCTTTTGCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_m21.b1 MSMg01no237_m21.b1 CHROMAT_FILE:
MSMg01no237_m21.b1 PHD_FILE: MSMg01no237_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:43 2005
         (235 letters)



>mm_chr15_71563604_71564238
          Length = 635

 Score =  404 bits (209), Expect = e-117
 Identities = 227/233 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttgctccttcccataccatacgcacattagagtgcctcttgggacttgcttccatttt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ccttgctccttcccataccatacgcaccttagagtgcctcttgggacttgcttccatttt 260

                                                                       
Query: 61  catttggtgtttcagttcacacatccaatgcagtactctcacagcattcttaagagttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttggtgtttcagttcacacatccaatgcagtactctcacagcattcttaagagttgc 320

                                                                       
Query: 121 attcagacaatacttggccccaaggggctgtctgtaaactgtacaatgtccaacagcact 180
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 attcagataatacttggccccaaggggctgtctgtaaactgtacaatgtccaacagtact 380

                                                                
Query: 181 ccagaccacatcctatcttatgcgaggagatcatccgcctctatcctactctc 233
           ||||| |||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagatcacatcctatcacatgcgaggagatcatccgcctctatcctactctc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no237_m21.g1 MSMg01no237_m21.g1 CHROMAT_FILE:
MSMg01no237_m21.g1 PHD_FILE: MSMg01no237_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:43 2005
         (191 letters)



>mm_chr15_71719350_71719940
          Length = 591

 Score =  323 bits (167), Expect = 4e-93
 Identities = 185/191 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactgtttttcacccagcctagccaagggctaagtcttctcttggggtgtgtgtgtgttg 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tactgtttttcacccggcctagccaagggctaagtcttctcttggggtgtgtgtgtgttg 332

                                                                       
Query: 61  gggtggggtcctggtctagtcagggataacaatactatcctggtattgctctgtctttcc 120
           |||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||
Sbjct: 331 gggtggggtcctggtctagtcagggatagcaatattatcctggtatttctctgtctttcc 272

                                                                       
Query: 121 ccaaagtcttggcatacatggtgagtagggatagagagggaagatgatgttaggaaaatg 180
           |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ccaaagccttggcatacatgatgagtagggatagagagggaagatgatgttaggaaaatg 212

                      
Query: 181 tttggggccag 191
           |||||||||||
Sbjct: 211 tttggggccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)