BAC Information

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BAC

Clone NameMSMg01-237N06
Chromosome15 (Build37)
Map Location 24,482,783 - 24,483,066
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666989
Downstream geneLOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237N06.T7 (MSMg01no237_n06.b1)MSMg01-237N06.TJ (MSMg01no237_n06.g1)
ACCAG402664AG402665
length740715
length of high quality
(start - end)
285 (77 - 361)329 (19 - 347)
definitionCHROMAT_FILE: MSMg01no237_n06.b1 PHD_FILE: MSMg01no237_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:45 2005CHROMAT_FILE: MSMg01no237_n06.g1 PHD_FILE: MSMg01no237_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTCCCTATAAATTCAGTACTTA
TCTATGAGATGGGATGACTATTAATCATTTTTTTGTAATGCCTTCAGTCT
ACCACTAATTTTCTGAATGATTTTTATTCTGACAATTCTCATTATTTTCA
ATCTTCCTTTGCTTTAAATTAATTTACATTTACATCTCACAATCTCTTAG
AGATGGTAGTATAAACCCTCTAAAACTTTCTTAAAATCTACAGACTCTTA
ATTTGTAAAGATTATATGCAAATATTTATGTTGACATCTCTGTGCATGTT
TCATAACCTATTTTTGTTTTAACACCTCCCCCCCCTTTCTCTCTGCATTA
ATATTAAAATACCTGCTAGCCTTTCCAGTATTAACAAACAGTCTTTTAAG
AATATGGCTCTATCAAAAGAAACAGCACTTCATCCTCCCACAAGAGAAAG
GGAGATAGAAGAGGAACCTAGCTCAGAAGCACAAGTTCTATATCAAGGGT
AAGAAATGTCCAGGACAACAGAAAATCATGTTTAGCAATGGGTAAATAAA
AATGTGGACTGTTTCAATTTCTTCTGCTAGAGAGTAGGAGAAAAGTACAA
ATTAAGATAAGGAGAAAGTATTACGAGCATCTTGAATCAAAATGAATGAC
AGCCATCCCAATAAAAGCATTGTGAAGAATACCCACCCAC
CGTACTATTTTCCGAGGATCCGCGGAATTCACATGATATGTCTTCACTGA
TAAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATATAAGATACAA
TTTGCAAAACACATGAAACTCAAGAAGAACAAAGACCAAAGTGTGGACAC
TTTGCCCTTTCTTAGAACGGGGAATAAAATGCCCATGGACAGAGTTACAG
AGACAAAGTTTGGCTCTGAGAGGAAAGGATGGTCCATCAAGAGACTGCCA
TACCCGGTGATCCATACCATAATCAGCCTCCAAATGCTGACACCATTGTA
TACACTAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTTTTTCTTGCG
ACGCTATGCCAGGGCCTAGCAAACACAGAAGTGGATGCTCACAGCCAGCT
ATTGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAA
GGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAA
CCAGTAACCCCCGGAGCTCATGTCTCTAGCTGCATATGTATCACAAGATG
GCCTAGTCCGCTGTCAGTGGAAAGAGTGGCCCATTGTTTTTGCTAACTTT
ATATGCCTTCAGTACAGGGGAACGCCCGGGCCAACAATTGCTATTGTCTG
CGTAGCGGAATGTTCGTACCCTCCTTCTTCTCATCCTTTATTCCCTCCTT
CTCTTTCTCCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_n06.b1 MSMg01no237_n06.b1 CHROMAT_FILE:
MSMg01no237_n06.b1 PHD_FILE: MSMg01no237_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:45 2005
         (285 letters)



>mm_chr15_24482583_24483267
          Length = 685

 Score =  503 bits (260), Expect = e-147
 Identities = 278/284 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttccctataaattcagtacttatctatgagatgggatgactattaatcatttttttgt 60
           ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||
Sbjct: 201 atttccctataaattcagtacttatctataagatgggatgactaagaatcatttttttgt 260

                                                                       
Query: 61  aatgccttcagtctaccactaattttctgaatgatttttattctgacaattctcattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgccttcagtctaccactaattttctgaatgatttttattctgacaattctcattatt 320

                                                                       
Query: 121 ttcaatcttcctttgctttaaattaatttacatttacatctcacaatctcttagagatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaatcttcctttgctttaaattaatttacatttacatctcacaatctcttagagatgg 380

                                                                       
Query: 181 tagtataaaccctctaaaactttcttaaaatctacagactcttaatttgtaaagattata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtataaaccctctaaaactttcttaaaatctacagactcttaatttgtaaagattata 440

                                                       
Query: 241 tgcaaatatttatgttgacatctctgtgcatgtttcataaccta 284
           |||||| ||  |||||||||||||||||||||||||||||||||
Sbjct: 441 tgcaaagataaatgttgacatctctgtgcatgtttcataaccta 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)