Query= MSMg01no260_d13.b1 MSMg01no260_d13.b1 CHROMAT_FILE:
MSMg01no260_d13.b1 PHD_FILE: MSMg01no260_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:15 2005
(537 letters)
>mm_chr15_85409106_85410044
Length = 939
Score = 915 bits (473), Expect = 0.0
Identities = 518/543 (95%), Gaps = 20/543 (3%)
Strand = Plus / Minus
Query: 6 aatcccaaagatcaggcaatccctctctctctctctctctctctctctctctctctctct 65
||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 839 aatcccaaaaatcagggaat--ctctctctctctctctctctctctctctctctctctct 782
Query: 66 ctctctctctctc------------tctgtgtgtgtgtgtgtgtgtgttccctcagttga 113
||||||||||||| | ||||||||||||||||||| ||||||||||||
Sbjct: 781 ctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt--tccctcagttga 724
Query: 114 gcaggaaaggtagctgggccttcccatgggacctaaaggggttggtgctatgaacaccat 173
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 723 gcaggaaaggtagctgggccttcccatgggacctaaatgggtcggtgctatgaacaccat 664
Query: 174 ctctttggcaggtgtctggagcagcctctcaccctctcactgtcatctgaaaagaacagg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ctctttggcaggtgtctggagcagcctctcaccctctcactgtcatctgaaaagaacagg 604
Query: 234 gtcatggtagtatgccccttgggagtgctgagggattagttcagatggcttttgccctga 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gtcatggtagtatgccccttgggagtgctgagggattagttcagatggcttttgccctga 544
Query: 294 ccttaggtggtgggatatggtggcacctacgagtgaagcctttctcattgccaatggttg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ccttaggtggtgggatatggtggcacctacgagtgaagcctttctcattgccaatggttg 484
Query: 354 tgaggtccaaggtgtgggagccattctggggactcctctggatagttttggggggaggga 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgaggtccaaggtgtgggagccattctggggactcctctggatagttttggggggaggga 424
Query: 414 ctattttgtgatggaggccccagaacttgcccctcccccatgtttctgtatgtgtgaccg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctattttgtgatggaggccccagaacttgcccctcccccatgtttctgtatgtgtgaccg 364
Query: 474 gacctccagaaatcccaccagagcatttatcccccccccc---acacacacctcttcgtg 530
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 363 gacctccagaaatcccaccagagcatttatcccccccccccacacacacacctct-cgtg 305
Query: 531 tta 533
|||
Sbjct: 304 tta 302
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 939
Length adjustment: 10
Effective length of query: 527
Effective length of database: 929
Effective search space: 489583
Effective search space used: 489583
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_d13.g1 MSMg01no260_d13.g1 CHROMAT_FILE:
MSMg01no260_d13.g1 PHD_FILE: MSMg01no260_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:16 2005
(367 letters)
>mm_chr15_85406448_85407213
Length = 766
Score = 688 bits (356), Expect = 0.0
Identities = 362/364 (99%), Gaps = 1/364 (0%)
Strand = Plus / Plus
Query: 1 tcttggccaggtctccaagatcaggcggtgcccacgggccctgcgccctgcctggggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttggccaggtctccaagatcaggcggtgcccacgggccctgcgccctgcctggggagg 260
Query: 61 cctgatactctccaccccaggcgatgcctccgtagccagggctgcccgccgggcctggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgatactctccaccccaggcgatgcctccgtagccagggctgcccgccgggcctggag 320
Query: 121 cgctccctctgcctggaccttgtaattatgttccacagccggggaaaccgcgggcctcgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgctccctctgcctggaccttgtaattatgttccacagccggggaaaccgcgggcctcgc 380
Query: 181 agcatctggctgcggttgcgaacttttgtttcaagatgcgcgactatttatagaaggaaa 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 agcatctggctgcggttgcgaacttttgtttcaagatgcgcaactatttatagaaggaaa 440
Query: 241 actggtaggatagtaatttcctaggagctggaggagaaattggccgcgtctttattaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actggtaggatagtaatttcctaggagctggaggagaaattggccgcgtctttattaaaa 500
Query: 301 ggggtggggggcggggcaatttatcaagactgtggccgcggggaggnggagggggtggtg 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ggggtggggggcggggcaatttatcaagactgtggccgcggggagg-ggagggggtggtg 559
Query: 361 cagg 364
||||
Sbjct: 560 cagg 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 766
Length adjustment: 9
Effective length of query: 358
Effective length of database: 757
Effective search space: 271006
Effective search space used: 271006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
