BAC Information

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BAC

Clone NameMSMg01-260P07
Chromosome15 (Build37)
Map Location 61,762,834 - 61,763,178
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3, LOC100040430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260P07.T7 (MSMg01no260_p07.b1)MSMg01-260P07.TJ (MSMg01no260_p07.g1)
ACCAG403479AG403480
length738784
length of high quality
(start - end)
345 (74 - 418)249 (79 - 327)
definitionCHROMAT_FILE: MSMg01no260_p07.b1 PHD_FILE: MSMg01no260_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:13 2005CHROMAT_FILE: MSMg01no260_p07.g1 PHD_FILE: MSMg01no260_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCC
GCGGAATTCTCCTGTGTTGCCAGGAGCTCACATGCAGGTTTCTTAATCAA
ATACATTCCTCGTATCAGGAGCACAAACCAAGCACCTTGCTTTGTGTACT
ACTGAAAATGAATGGAGTGTATATTATAGCTGCATGAGAACTAATAGGCT
CATGCTGAGACCTGCCTGGCAGCCTGTGACATACAACTACTCCACCTAGG
AGTCATCCATTTTAGTAACCGGGTTCCTGTTCTTTCTGTTTTCATATTGT
CCCCAGTTACTTTCTTCCTCAGTTACTGTATGCTTCAGCAGCACCTACAA
GCATGGCGTTGCTCTCCAATGTGCGTCAAAGGAATATGCTTGCTAAATAG
CACAGACTCCTGTAGCCTCCCCCACCTTTCACTGGTTAATGAGTGATTGA
AGGATGTGTTCATGGAAGGCAAAGGTTCACAATATGTCAGAAGAGGTGTT
GGGGACAGGCATAGGGTCCCCATGAACTTGGGTCTGCTGTAGTGCACAGC
GTTGCTTACCTAATATTCCCTGTGCCTCCCCACACACCAAGGCTGCTGCA
TCTTTATTCTGTCTCTTTCTTGGCTCTTGTCACACTATTCACATTAGTAA
TTAGCTATTTTGTAACATTGACTCATTCCTTGTCACACAAGATGGCGGCC
CGCCCTCAGTGCCCAACACGTTTCCCTACAGTTTGTAA
NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACCTCAGAAGAGTTAACCCT
TCCTTCCTTCCTTCCTTCATTTCTCTTTCTTCTTTCTTTCTTTATTCCTT
CCTTCCTCCCTTCCTTCCATTCTTCCTTCCTCCCTCCCTTCCTTCCTTAT
CTTGTTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTCTTCTACTCCCTTGACAAGCTAANTTCTGGNATTATAAACATGG
NNCATCATGTCNGTTTATAAATAACACTATTTTCCATGGTAANCTGANAC
ACNNNTATAATAAAAAAANAAAGCTGCCCCCACCTAAATTCTACCCCTTT
GGATGGGCCTTTATGGCTCCCCCCACAACCACCNNNCTTTTACGTACNNN
NNNNNNNNNNNNNNNNTCCTTTTGCCCATTCCCCGGGCAAAGGTGGGAGC
GGGGCTGGCTNNNCTCCNNNNNCNNNNNNNNNCTTTTGNNTTTAAAAATT
TTTTTTTACTCAAGGGGTGGGGACTGGGGTTATGTTNTCTGGGAACCGCC
TCGGGGNTTCCCCCCGTGGGGGGGGGGGGCCNGGTCTNNNNAAGGGAANT
NAACGCANNNNNNNNNNNNNNNNNATCACTTTTNNTTTTGCCCCGAACTT
TGAGAAAAAAAAACTAAACNCNGTGGCACCCCCGTTTTTTTTNACNANNN
NCTCCCCTGCTTTTTTTGTGGGGAAGGGAGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_p07.b1 MSMg01no260_p07.b1 CHROMAT_FILE:
MSMg01no260_p07.b1 PHD_FILE: MSMg01no260_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:13 2005
         (345 letters)



>mm_chr15_61762634_61763378
          Length = 745

 Score =  644 bits (333), Expect = 0.0
 Identities = 342/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagctcacatgcaggtttcttaatcaaatacattcctcgtatcaggagcacaaaccaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gagctcacatgcaggtttcttaatcaaatacattcctcgtatcaggagcacaaaccaagc 486

                                                                       
Query: 61  accttgctttgtgtactactgaaaatgaatggagtgtatattatagctgcatgagaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 accttgctttgtgtactactgaaaatgaatggagtgtatattatagctgcatgagaacta 426

                                                                       
Query: 121 ataggctcatgctgagacctgcctggcagcctgtgacatacaactactccacctaggagt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 425 ataggctcatgctgagacctgcctggcagcctgcgacatacaactactccacctaggagt 366

                                                                       
Query: 181 catccattttagtaaccgggttcctgttctttctgttttcatattgtccccagttacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 catccattttagtaaccgggttcctgttctttctgttttcatattgtccccagttacttt 306

                                                                       
Query: 241 cttcctcagttactgtatgcttcagcagcacctacaagcatggcgttgctctccaatgtg 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cttcctcagttactggatgcttcagcagcacctacaagcatggcgttgctctccaatgtg 246

                                                        
Query: 301 cgtcaaaggaatatgcttgctaaatagcacagactcctgtagcct 345
           |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 245 cgtcaaaggaatatgcttgctaaatagcacagtctcctgtagcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)