BAC Information

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BAC

Clone NameMSMg01-261F10
Chromosome15 (Build37)
Map Location 41,252,625 - 41,253,050
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664872, Zfpm2, Ppia-ps25
Downstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261F10.T7 (MSMg01no261_f10.b1)MSMg01-261F10.TJ (MSMg01no261_f10.g1)
ACCAG403756AG403757
length735761
length of high quality
(start - end)
---426 (74 - 499)
definitionCHROMAT_FILE: MSMg01no261_f10.b1 PHD_FILE: MSMg01no261_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:42 2005CHROMAT_FILE: MSMg01no261_f10.g1 PHD_FILE: MSMg01no261_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAA
TTCATCTGCGTTGAACTCTAACCGTCAATAATATTGACGACTAAAGTCGT
AATTCCCAATCATGCCTTGTGCTCACACTGGTAAGTAAAAAGCCTTCTGA
ACTTTGCAGAATATGGCAGATCTTTCAAGTCTTTGGTGCATCTTTTGAAA
CTGACATAAAAAGCCTTTAGACAATAATGACTCCCACAGCGATCATCCTC
TGCCCTTGAAAAATCAATGTATTACTAATTCTTGATGGTTTCACAGTCTT
CCAAAACCAAATCTATGAGGCTGTCGTTTCCTGTTACTCAGGTCCAGACA
TAAATCATATTACTAGTGCTGATCAATTTTTGAATTGTAAGTAATACCTA
AATAAAGAAAACCTTTTACTTTCTATAGATCGCCCAAATTTCACAATGCA
TTATAATTTCACAGGTAGGGTCTTATTTTTGATTAATAATGCATAAAGCA
TAGGCATTTGTGTTGGGAAAAGTCACTTTATGCCCTCTAAATCGGCATAT
AGCTCAATCATTCAAGGTGAAAAGACTTTCTGGTCTTTCCTGACAGATAG
TATTGTTTTCAGTGACCTTAGTTTTCAATTTGTCCCCCTGAAAAACCTTT
ACTTTTATTAACTCTCGCAAATTATACATAAAAAAGGCCCAGGTTTCCGG
ATGTGGGTAAAAACCAATACCCGAATACCAGAATG
CATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATCAGAAAAGTACTTAACATTCTAAT
TGCAAAAGAAGGGATTACTTTCAAACAATGTTTACCTAAGAATAAAAAGA
CACGAGGCTACTGTAATTAAAAGTGTAGTTTAAATTTTAGATAACTATTT
TAATGAATTTATTAAAGATTATAGTTCCAAAGTACCATACTTGCTATAGT
CCCCATTCATGTTTTATTAAAACTTAATTCACTCACTTGGCAAATAAGTC
AAGAGACTTTGTCTACTTCTGAATCTGTGGCATAGTGAGGGAGGGACAAT
AAATAATAAATACCATATATATCATCAAAGATCTTAACTAGAGGTAATGG
AGGGTGTGAGTGGGTACTGTGTCAGATAACAAAAGGGACACGATTTCCAT
CTGGGAAATTGGACAGTGCTTCTCTCAAGAAATGAGGAGTGGAGTGGGAG
CTGAAGGTGAGTGGAATGTCATCAATAAGAATGGGGAAAGAATCCTGGCT
CAGCAGTTAGGAGTACATAGTATATATATACCACCCCATTCTACTCACAC
ACACCTCACCTCCCCGTAAGAATAACCAAATTGGAAAAAATAATGTTCTT
TTTTCCCAGCCAGCAAGCAATTTACCCATAGGACTTGTCCGGTTACCCCA
AGGACTCCCCAATGTAAAGTGTTTTGGAAAAAACCTGTGTAAACCACCAG
AAATGTTCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_f10.g1 MSMg01no261_f10.g1 CHROMAT_FILE:
MSMg01no261_f10.g1 PHD_FILE: MSMg01no261_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:42 2005
         (426 letters)



>mm_chr15_41252425_41253250
          Length = 826

 Score =  801 bits (414), Expect = 0.0
 Identities = 423/426 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcagaaaagtacttaacattctaattgcaaaagaagggattactttcaaacaatgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 catcagaaaagtacttaacattctaattgcaaaagaagggattactttcaaacaatgttt 567

                                                                       
Query: 61  acctaagaataaaaagacacgaggctactgtaattaaaagtgtagtttaaattttagata 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 566 acctaagaataaaaagacacgaggctactgtaattaaaaatgtagtttaaattttagata 507

                                                                       
Query: 121 actattttaatgaatttattaaagattatagttccaaagtaccatacttgctatagtccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 actattttaatgaatttattaaagattatagttccaaagtaccatacttgctatagtccc 447

                                                                       
Query: 181 cattcatgttttattaaaacttaattcactcacttggcaaataagtcaagagactttgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cattcatgttttattaaaacttaattcactcacttggcaaataagtcaagagactttgtc 387

                                                                       
Query: 241 tacttctgaatctgtggcatagtgagggagggacaataaataataaataccatatatatc 300
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 386 tacttctgaagctgtggcatagtgagggagggacaataaataataaataccatataaatc 327

                                                                       
Query: 301 atcaaagatcttaactagaggtaatggagggtgtgagtgggtactgtgtcagataacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atcaaagatcttaactagaggtaatggagggtgtgagtgggtactgtgtcagataacaaa 267

                                                                       
Query: 361 agggacacgatttccatctgggaaattggacagtgcttctctcaagaaatgaggagtgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agggacacgatttccatctgggaaattggacagtgcttctctcaagaaatgaggagtgga 207

                 
Query: 421 gtggga 426
           ||||||
Sbjct: 206 gtggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)