BAC Information

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BAC

Clone NameMSMg01-263C21
Chromosome15 (Build37)
Map Location 92,750,838 - 92,857,580
singlet/doubletdoublet
Overlap geneLOC100042552
Upstream geneMuc19, LOC100042529, Cntn1, Pdzrn4
Downstream geneLOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263C21.T7 (MSMg01no263_c21.b1)MSMg01-263C21.TJ (MSMg01no263_c21.g1)
ACCAG405073AG405074
length781760
length of high quality
(start - end)		344 (76 - 419)605 (74 - 678)
definitionCHROMAT_FILE: MSMg01no263_c21.b1 PHD_FILE: MSMg01no263_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:01 2005CHROMAT_FILE: MSMg01no263_c21.g1 PHD_FILE: MSMg01no263_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,857,237 - 92,857,580)(92,750,838 - 92,751,096)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAATAAGCGGAA
TTCGTTAATGTGGTTCCATAATGAGGATTGTAAATCAACTGTTCCATAAA
CTGAATTATTAAGGTTGCTTAAAGAGAGCTCTGACATACGCTCTGTGTAA
ACAGCAAAGTAGGAAAGTCTTCCGTCCTTTCTTCCCCATGAACTAGGGCT
TTGTAAGCAGGGACTCTCCAGCATCCGGTGGCTGTGGCATCAAGCTTCTT
GGAGTCAGACAGGCAGGTGCCCGAGAAGGCAGTACCACAATCGTTCTTGA
TAAGGAAGTGAGGTCCTCTCCCATTTTGATGACAAATGCCTTAGAGGGAA
AGCATCCAGTCCGGCCTTGGAGGAAGGGGGACTGAAGTTGCTGCTTTCTG
AGTCTGGAGGGGTTGGAGCACCCCCCCCCATGAGAGCCCCCACCAGAGGA
AGACTGCTGCTGAAGAGAGAAGTGCATTAGTAAGGTGTAGGTCGTAAGAA
GTTCCCGTTCATGAAAGTCCATCGCTTGTCCCGTCTTTGGCTCTGATTGT
ACCCTTATGCTGTAACTAAATAACGCCATTTGTCCGTCATACGTTCACAA
ATCCTGTTTTACCTTCTTTCTATTTCCGCAGCTTTTTATCCTCTTTGTAT
TATAATACTTATTCCTTTCTACCTATCTTTTTCTTTATATCTGTTCTTTC
CTTATCATCACCCCCCCTCTTTTCCTACATATCTTCATTTTATACTCTAA
TTCGCACCAGCTCATACTCCACCATTCCTAA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGACATGCTTTATTCAAAAAGCAAC
AATCACACTTCCAGATGTACAGCCCTACAACACCATCTTGTCCCCAGTAG
CACAACAAAAGAATTCTTAGCTCACGATACTCAGTGTGAGTTAAGTATAA
GGCTCAGTTTAATAGTGATGCGCTTGTCTGACATAGGCAAGGCCCTGGGC
GCAGTCCCCACCATTGAAAATGAATCCAAAACTGGGTGAGAATTAAGATG
CACTGTGGGCGTTTGAAGACTATGAAGAGTCAGATTCCAGCACAAGACTC
CAGGTTTGGACGTGGCCTCCATTATGGGACGTGCGGTCCATGGAGAACCA
CTCTGGTCTTCCTATAGNCATTGTCTTTTCCCATTAGTCCTTGTCCTTGT
CCTAGCTGACTAATTCAGAACCGTAGCAGGTTCAGCCTTCTAAGAGCGCA
ATACTAAATGTGGGGTCAGGACTGAATTTTGAGACTCTAATCTTAAATTA
GAATTATCTCCACAAAGGACAACGTTACATAGGGAGAGTCAGGGAGCACG
GGGTTATGATTACGTGGTAAACACAGAGTTCATGGAGTAAGAACGTGCGA
GGAGTGGAGAGCTGGACCGTGCTTTACATCAGCCAGACAATAGCACTGTA
AAAGACCAAACGGTGTTAACCCATCAAATCTACTTTCTTTATACTAAAGC
TTAATTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_c21.b1 MSMg01no263_c21.b1 CHROMAT_FILE:
MSMg01no263_c21.b1 PHD_FILE: MSMg01no263_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:01 2005
         (344 letters)



>mm_chr15_92857037_92857780
          Length = 744

 Score =  634 bits (328), Expect = 0.0
 Identities = 340/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattgtaaatcaactgttccataaactgaattattaaggttgcttaaagagagctctgac 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gattgtaaatcaactcttccataaactgaattattaaggttgcttaaagagagctctgac 485

                                                                       
Query: 61  atacgctctgtgtaaacagcaaagtaggaaagtcttccgtcctttcttccccatgaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 atacgctctgtgtaaacagcaaagtaggaaagtcttccgtcctttcttccccatgaacta 425

                                                                       
Query: 121 gggctttgtaagcagggactctccagcatccggtggctgtggcatcaagcttcttggagt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gggttttgtaagcagggactctccagcatccggtggctgtggcatcaagcttcttggagt 365

                                                                       
Query: 181 cagacaggcaggtgcccgagaaggcagtaccacaatcgttcttgataaggaagtgaggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cagacaggcaggtgcccgagaaggcagtaccacaatcgttcttgataaggaagtgaggtc 305

                                                                       
Query: 241 ctctcccattttgatgacaaatgccttagagggaaagcatccagtccggccttggaggaa 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 304 ctctcccattttgatgacaaatgccttaaagggaaagcatccagtccggccttggaggaa 245

                                                       
Query: 301 gggggactgaagttgctgctttctgagtctggaggggttggagc 344
           |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 244 gggggactgaggttgctgctttctgagtctggaggggttggagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no263_c21.g1 MSMg01no263_c21.g1 CHROMAT_FILE:
MSMg01no263_c21.g1 PHD_FILE: MSMg01no263_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:01 2005
         (605 letters)



>mm_chr15_92750292_92751296
          Length = 1005

 Score =  462 bits (239), Expect = e-134
 Identities = 254/259 (98%)
 Strand = Plus / Plus

                                                                       
Query: 347 attgtcttttcccattagtccttgtccttgtcctagctgactaattcagaaccgtagcag 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 attgtcttttcccattagtccttgtccttgtcctagctgactaattcagaaccgtagcag 606

                                                                       
Query: 407 gttcagccttctaagagcgcaatactaaatgtggggtcaggactgaattttgagactcta 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gttcagccttctaagagcgcaatactaaatgtggggtcaggactgaattttgagactcta 666

                                                                       
Query: 467 atcttaaattagaattatctccacaaaggacaacgttacatagggagagtcagggagcac 526
           | ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 667 accttaaattagaattatctccacaaatgacaacgctacatagggagagtcagggagcac 726

                                                                       
Query: 527 ggggttatgattacgtggtaaacacagagttcatggagtaagaacgtgcgaggagtggag 586
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 atggttatgattacgtggtaaacacagagttcatggagtaagaacgtgcgaggagtggag 786

                              
Query: 587 agctggaccgtgctttaca 605
           |||||||||||||||||||
Sbjct: 787 agctggaccgtgctttaca 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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