BAC Information

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BAC

Clone NameMSMg01-263M15
Chromosome15 (Build37)
Map Location 45,804,825 - 45,805,134
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnv1, LOC100039389
Downstream geneEG432951, LOC100039438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263M15.T7 (MSMg01no263_m15.b1)MSMg01-263M15.TJ (MSMg01no263_m15.g1)
ACCAG405515AG405516
length755751
length of high quality
(start - end)		319 (43 - 361)400 (76 - 475)
definitionCHROMAT_FILE: MSMg01no263_m15.b1 PHD_FILE: MSMg01no263_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:48 2005CHROMAT_FILE: MSMg01no263_m15.g1 PHD_FILE: MSMg01no263_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATAGTGTTACTCATGCAAAAGATTATCTCAGCTGGCATGGTTGATGG
GTTTGAAATCACTAATAGAGCCCCTAGTGTAGTGTAACATATTCTTTTGA
TTCTTGCTTAAATATCTGTAGAAAATGGATCCAAGTATATGGATACTGAA
ATATCCTTAATCCACTTTTGTAAGGCTTTTCAGGTGCAGTTGGGTAAAAA
GGAATCCTTGTATACTACCTAAACTTTTAAAGAAACTCAATATATTCATT
GATTTTTAGAACGAACTTTGTTGTATTTGTGTCTCAGTTTGTCTTTAATC
CCTTGGTTTAAATANGTTTTCCCCCCCCCCCTCTCGTTGTAGTAAGAGAT
TTTCAGTTACTGTACCCCCCCCTACAAAAAAAAAAACACCCACAGTAGTA
GTTTTCTCTCCAGAAACGTCATTATCTACACCTATAATGTCTTATTAACA
CTACTACTTAATTGCGAGCTATGCTTGAATAATTATTACTATCTCCTTTA
ACATGTATTCGAATATATTTATCACATCTTACAATCTTATCTCTTTTTAT
ATACCTTCTTTTTTCTTATCTAACATTTTTGATACTCTAATATCTTCTGC
TCCTCCCTCTCTCATCTTTCCTTTTGCCTTTCTTATATCTACTGAATATC
TTTTTATATATATTACTAATGCCTTGCCTATTATCCTATTTTTGTTACAT
CTTTT

AATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTACAGTGGGGCATAGAGCCTTC
CAAGGAAGAAGGGCCTCTCCTCCCATTGATGACCAATTAGTCCTCAGCTA
CATATGCAGCTGGAGCCATGAGTCCCACAATGTGTATTCATTGGTTGGTG
GTTTAGTCCCAGGGAGCTCTGGGGGTACTGGTTAGTTCATACTGTTGTCC
ATCCTATGGGGCTGCAAAACCCTTCTGCTCCTTGGGTAATTTCTCCAGCT
CCTTCTCTGGGGAACCTGTGCTCTGTCCAATGGATGACTGTGAGCATCCA
CTTCTGTATTTGTCAGGTGCTAAGAGAACATCTCAGGAGACAGCTATATC
AGGCTTCTGTCAGCAAGCTCTTGTTGGCATCCAAAATAGTGTCTGGGTTT
GGTGATTGTATATAGGATGGATTCCCAGCCACGTCAGTCTCTGCACAGTC
ATTCCTTCAGTCTCTGCTCTGAACTATGTCTCTATCACTTCCTCCATGCT
TATTTTGTTCCCCCTTTTTTTAATGATCGACTAAACCATCAATTTACTTC
TCTTTTCTTGAATTTTCTGCGCCTCCCATCAAGATCCTATTTTTACCATA
AATTTTGTTCTTTTTTCCTCATTCTTTTCGAGATTCATCTCTCTTCCTTC
CTTCCATCCGTTCTTTTTTTCTTCACTACCTCCCTCTTCTATATTACCTC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_m15.b1 MSMg01no263_m15.b1 CHROMAT_FILE:
MSMg01no263_m15.b1 PHD_FILE: MSMg01no263_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:48 2005
         (319 letters)



>mm_chr15_45804621_45805339
          Length = 719

 Score =  514 bits (266), Expect = e-150
 Identities = 299/310 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatagtgttactcatgcaaaagattatctcagctggcatggttgatgggtttga 64
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatagtgttacttgtgcaaaagattatctcagctggcatggttgatgggtttga 264

                                                                       
Query: 65  aatcactaatagagcccctagtgtagtgtaacatattcttttgattcttgcttaaatatc 124
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatcactaatagaggctctagtgtagtgtaacatattcttttgattcttgcttaaatatc 324

                                                                       
Query: 125 tgtagaaaatggatccaagtatatggatactgaaatatccttaatccacttttgtaaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtagaaaatggatccaagtatatggatactgaaatatccttaatccacttttgtaaggc 384

                                                                       
Query: 185 ttttcaggtgcagttgggtaaaaaggaatccttgtatactacctaaacttttaaagaaac 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttcaggtgcagttgggtagaaaggaatccttgtatactacctaaacttttaaagaaac 444

                                                                       
Query: 245 tcaatatattcattgatttttagaacgaactttgttgtatttgtgtctcagtttgtcttt 304
           ||||||||||||||||||||||||| | |||||| || ||||||||||||||||  ||||
Sbjct: 445 tcaatatattcattgatttttagaatgtactttggtggatttgtgtctcagtttcccttt 504

                     
Query: 305 aatcccttgg 314
           ||||||||||
Sbjct: 505 aatcccttgg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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