BAC Information

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BAC

Clone NameMSMg01-264C13
Chromosome15 (Build37)
Map Location 92,855,584 - 92,855,777
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042529, Cntn1, Pdzrn4, LOC100042552
Downstream geneLOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264C13.T7 (MSMg01no264_c13.b1)MSMg01-264C13.TJ (MSMg01no264_c13.g1)
ACCAG405784AG405785
length713745
length of high quality
(start - end)
292 (422 - 713)194 (129 - 322)
definitionCHROMAT_FILE: MSMg01no264_c13.b1 PHD_FILE: MSMg01no264_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:16 2005CHROMAT_FILE: MSMg01no264_c13.g1 PHD_FILE: MSMg01no264_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAATNGGNGGAATTNTTTGT
TTCCCACAAAAAGNATTTTTAATGGGGTTATTTGATTTTCTNGAGTNNAC
CTTTTTGACCCCTTTATATATATTGGATATTAGTCNCCTATCTGATTTAG
GATAGGTAAAGATNCTTTCCCAATCTGTTGGCAGTCTTTTTGTCTTATTG
ATGGTGTCTTTTGCCTTGCAGAAGCTTTTAAACTTTATGAGGTCCCATTT
ATCGATTCTCTATCTTACAGCACAAGCTATTGCTGTTCTATTCAGCAATT
TTCCTCTTATACCCATATCTTTGAGGCTTTTCCCTACTTTCTCTNCNATA
GCTTCCCCCCCCCCCCCCCTATGTGGAGTTNNTTAATNNANTTAGATTTG
ANCTTAATACNNGGAGNTNAAAATGGATCAATTCACATTCTTCTACATGA
TAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATACTGTCTTTTTTCC
ACTTGAAGGTTTTCTCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGT
GGGTTCATCTCTCGGTTTTCAATTCTGTTCCATTGGTCTACTTGTCTGTC
ACATTACCAGTACCATGCAGTTTTTATCACAATTTCTCTGTAGNACAGCT
TTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGA
GTTTTTGCTATCC
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCAGAAATTCAGTAAATGTCATGATCGGAACAAGA
GCTCTGTGTATGTAACATTTTTGCACCATCTCCTTTGGATTTGACTCAGG
ATTTTTGGCTGGCTGTTGTTTGTGGCTCTTGCTGTTGACCCATGCGTTCT
TTGGACTTTTGTCTGGTGACCATGGGGAAGCCTTTCCTGTTCTGAGAGCC
ATAGGACCTCTGAGTAGCCATGTTCTCTACAATGTGGAAGAAGCCAGGTT
CTAGAAGAAGGTGGAAACAGCTATTTTTTTTCAGGATGTGGAGTCCAGAC
AGCTTCTAAGTTCTCTCTTTTTTCCACCACCACTCTACTTTCCTGTGCTT
TTGATATTATCTCTCCTCTTCTTCTCCTCCCTTCTCTATTTGTCTTTTTC
TCTCCTCCTTTCTGAAACAAAGTCTCAGGCTGGACCACATCCCGGCTGTA
TAGATCAGACTGGCCTCAAACTTGCCTAGGGCTCCCACATGCTGGAATCA
CAGGCTGATATTGCCATAGCTGAGTCCTCCATGGACTTTTTATTACAGTT
CCTTTTCTTCCCACGCTAGTTGCGTTTACATTTCCTATGCTGATGGATTT
GAACTAGTTGTTTTTCTCTGCCATTGAATGGATACTCTGGTGTATTAAGT
AACTACCTTGAAACATTCCCTACTTCCGTGGACCGAGGCATAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_c13.g1 MSMg01no264_c13.g1 CHROMAT_FILE:
MSMg01no264_c13.g1 PHD_FILE: MSMg01no264_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:16 2005
         (194 letters)



>mm_chr15_92855384_92855977
          Length = 594

 Score =  375 bits (194), Expect = e-109
 Identities = 194/194 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcctttggatttgactcaggatttttggctggctgttgtttgtggctcttgctgttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tctcctttggatttgactcaggatttttggctggctgttgtttgtggctcttgctgttga 335

                                                                       
Query: 61  cccatgcgttctttggacttttgtctggtgaccatggggaagcctttcctgttctgagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cccatgcgttctttggacttttgtctggtgaccatggggaagcctttcctgttctgagag 275

                                                                       
Query: 121 ccataggacctctgagtagccatgttctctacaatgtggaagaagccaggttctagaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ccataggacctctgagtagccatgttctctacaatgtggaagaagccaggttctagaaga 215

                         
Query: 181 aggtggaaacagct 194
           ||||||||||||||
Sbjct: 214 aggtggaaacagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)