BAC Information

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BAC

Clone NameMSMg01-264J24
Chromosome15 (Build37)
Map Location 100,423,627 - 100,423,873
singlet/doubletsinglet
Overlap genenone
Upstream geneAqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1
Downstream geneDazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264J24.T7 (MSMg01no264_j24.b1)MSMg01-264J24.TJ (MSMg01no264_j24.g1)
ACCAG406120AG406121
length694754
length of high quality
(start - end)
182 (413 - 594)247 (77 - 323)
definitionCHROMAT_FILE: MSMg01no264_j24.b1 PHD_FILE: MSMg01no264_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:52 2005CHROMAT_FILE: MSMg01no264_j24.g1 PHD_FILE: MSMg01no264_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAATACGACTACTATTGTACGTACTCCGCGGAATTCCTATCTT
TACTGAAACTCCGCCCCGCCCCCTCGCTCTTAAGATACATCTGTCCTCTC
TAATTCTCACCCAGAACTCTAGCTCGTCCCCTTCGTTTTCTGGGTCCTGA
TTTGAGAATGTGTGCTATTTCCCTGACTGGAGGAATGTCCTTGCCCATGG
TGACATTCATCGTCCATGTCTGCTGTGATCCTATAGAACGCTATCCAAAC
CCTTCCTCAGGCCTGACGCTGAGTGCTGTTACCTGGGGAACATTTTATCA
TCTTTGCACGTCTGTCCACACAGGATAAAATTGTTTTACTTTTGTACTCC
NNGCCAGCCCAACCGGTTCTTATTACACACACACACAAGGGCTGTGTCTC
AGAGAAACAAAGTTCCTGCTTTCTGTCCTCCTACCCAGGTGCCCCACAGC
AGCCCTGTAACCATGATTATATGAGTATTTGATACTTGGAGCCTGAGTCC
AGCCTGGACCACATAGTGACACCGTGTCTTTAAAAAAAAAAAAAAAGCCA
AGCTCACAATGATCTGATTCACAGTTTTAAGTGATAACTCTGAGGCATAG
GGAGAAGGAAGGAGGTTTTTTTTTTTTTTTTTCATCTAACCTCACTGTAT
TCTTTATTTCAATTTATTTTTTTCTTTTATCCTTCTTTTTTTAT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGGTGAAAAAGCTTTGTGTCAA
CTGTCAACCTTCCTTGCCCATGAACTGTGCCTGGAACCACCCCCACCATG
AGAACTGACTGCAGCCATAGACAAGAAAAGGCATCAGGGAGAACCATGGA
GAAGAATGAACATGCATATGACCTGTGAGGGACTTCACTCTGATTGCGTT
TCGAGGAAGCTGGTGTGCTTTCGTCTTTTAAGGAGTAAACAGTCATTTCA
GAAAAAGAAAGTATATAGAAGCATATTTACAAAACAAAACAAAAAAACCC
GCCAGGCATGGTGTTTTTTTTTTTCCCCAACCGNACTCGGGAGGCAGAGG
CTGCTGGATTTCTGAGTTCCACCCCAGCCTGAACAACAGAGTGAGTTCCA
GGACAGCCAGTGCTATACAGAGAAACCCTGTCTCATATAAATAAACAAAC
AAACTAACTATCTAATTAACAAACAAACAAAACAAAACCTCTAAATCACA
TGTTCAAACACTTATCAAGTATCTGTGCATTTTAATATATCTTTTTGGAA
CTTACTTCTTATTTTACTTGTATGGGTGATTTCCCAGTCTTCGTTTATTT
CATTTATATATCCCTATTTACACTCACTTTCGCTTTCCCTCCTGGCCTCA
TTTTTCTATCATTATCTTTATCTCTTTATCTTTTTTCCTTCCTCTTTCTT
CTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_j24.g1 MSMg01no264_j24.g1 CHROMAT_FILE:
MSMg01no264_j24.g1 PHD_FILE: MSMg01no264_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:52 2005
         (247 letters)



>mm_chr15_100423427_100424073
          Length = 647

 Score =  431 bits (223), Expect = e-125
 Identities = 241/247 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggtgaaaaagctttgtgtcaactgtcaaccttccttgcccatgaactgtgcctggaa 60
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggtgaaaaagctttgtttcaaccgtcaaccttccttgcccatgaactgtgcctggaa 260

                                                                       
Query: 61  ccacccccaccatgagaactgactgcagccatagacaagaaaaggcatcagggagaacca 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacccccaccgtgagaactgactgcagccatagacaagaaaaggcatcagggagaacca 320

                                                                       
Query: 121 tggagaagaatgaacatgcatatgacctgtgagggacttcactctgattgcgtttcgagg 180
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tggagaagaatgaacgtgcatatgacctgtgagggacttcactctgattgtgtttcgagg 380

                                                                       
Query: 181 aagctggtgtgctttcgtcttttaaggagtaaacagtcatttcagaaaaagaaagtatat 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagctggtgtgctttcttcttttaaggagtaaacagtcatttcagaaaaagaaagtatat 440

                  
Query: 241 agaagca 247
           |||||||
Sbjct: 441 agaagca 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)