BAC Information

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BAC

Clone NameMSMg01-264M12
Chromosome15 (Build37)
Map Location 33,373,283 - 33,373,596
singlet/doubletsinglet
Overlap genePgcp
Upstream geneSema5a, LOC100040962, Sdc2, 1700084J12Rik
Downstream geneTspyl5, LOC675463, Mtdh, Laptm4b, Matn2, Rpl30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264M12.T7 (MSMg01no264_m12.b1)MSMg01-264M12.TJ (MSMg01no264_m12.g1)
ACCAG406232AG406233
length721853
length of high quality
(start - end)
314 (46 - 359)246 (123 - 368)
definitionCHROMAT_FILE: MSMg01no264_m12.b1 PHD_FILE: MSMg01no264_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:04 2005CHROMAT_FILE: MSMg01no264_m12.g1 PHD_FILE: MSMg01no264_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTCCAGGCTCTAATGTGGACTAGCCCCTGGCATTGTTTAAGTC
ATTGCCTTCTTTTAATCGTGGTTTGCTTATCTATTACTGAGGGATGCTGC
AATCAGATGACATAGTCTCAAGTGAAGTATGATTGTTGTGAGAAACAAAT
GAGACAATGTCTGGGAAGAAATTATCAGTGTCTGACATGGTGTTAACTGC
CCAGTACCCCCAGTTCCTCTCTGCCCCAAGCCCCACCCCCTTAACAATTA
GCCAGCTATCCCTTTCATTACTGATGCAACTGTCAGTACCTTGACATTTA
CACAGTTGNATTCTATCACCNNAACCCTCCATTACCTCTATCCCCAAATT
GACTCCTAATTTTTTCTATTCCAACAGAATTTATTTTTTTGATAACAATT
GTTATTTTCACAGCACTCTTTTTTTTTAATTTAATTTAATTTTATTTTAT
TTTTTGCGTCCTTGATTCGTTCTTTTTTTCCATTTTTATTAGGTATTTAG
CTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATAACCACCCACC
CCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTG
TACTAGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGA
TGGCCGACTAGGCCATCTTTT
CAAGAAATTATTATAATTTTATTTTTTTAGAAGCAAAAACAATCTCTCTA
TGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTTTATTTCTGATTTTTTAAGTTTCA
ATACTTTTTCGGTATCCCTTAGTTAGTTTGACTAGATGTTTAACTATCTT
GTTGATTTTCTTAAAGAACCAGCTTTTGGTTTTATTGATTCTTTGTATCA
TCCTCTTTGTTTCTGTTTGGTTAAATTTTGGCCCCGAGTTAGGAATGTGT
GTGTGTCATAGCCTGTGTGTGGAAGTTAGAGGACAATTTTTTGGAGTTAT
TTCTTCACTTCCAAATTGATCATTCAGCATCTCTTGTTTTTACCCATAAA
GGCACTACTTTAATGATTCTCCATTACTATACCGGTGTTTTTCTTTTCTC
TACCTCCCACCTTACTAAGAAAATGCAAATAGAGATCAACTACTGATTGG
ATAGTATATAGAATTTTATATGCTTACTTTTGGTACCTGTTATTATATAT
GGTCTTCTAGGTATCTAACAATAGGGCTTTCAGGTTTTCTTAGGAAGAAC
ATTTTATTCTTCTGAGCTACATTCACTGGTCTTATTATATTTACTTTTGC
TTTCCTTCGATACCTATATTTTTTGCTATCTTATTTCTTGCTTGTTCGGA
AACTTAGTGATACTATTTGTCCCTATCTTCCATTATTGTCTGGGATTGAT
TATGCAAACCCCAATTGACAGTGGTACGCTACCCTTCCCCTTTTTATCGG
AGATATCAATGTCCTCACTTTTACCTTGTTGTTTTTCTCTTTTATTTTGT
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_m12.b1 MSMg01no264_m12.b1 CHROMAT_FILE:
MSMg01no264_m12.b1 PHD_FILE: MSMg01no264_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:04 2005
         (314 letters)



>mm_chr15_33373084_33373797
          Length = 714

 Score =  561 bits (290), Expect = e-164
 Identities = 306/314 (97%), Gaps = 5/314 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatctccaggctctaatgtggactagcccctggcattgtttaagtcattgccttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattcatctccaggctctaatgtggactagcccctggcattgtttaagtcattgccttc 259

                                                                       
Query: 65  ttttaatcgtggtttgcttatctattactgagggatgctgcaatcagatgacatagtctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttttaatcgtggtttgcttatctattactgagggatgctgcaatcagatgacatagtctc 319

                                                                       
Query: 125 aagtgaagtatgattgttgtgagaaacaaatgagacaatgtctgggaagaaattatcagt 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aattgaagtatgattgttgtgagaaacaaatgagacaatgtctgggaagaaattatcagt 379

                                                                       
Query: 185 gtctgacatggtgttaactgcccagtac-----ccccagttcctctctgccccaagcccc 239
           ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||
Sbjct: 380 gtctgacatggtgttaactgcccagtacagtacccccagttcctctctgccccaagcccc 439

                                                                       
Query: 240 acccccttaacaattagccagctatccctttcattactgatgcaactgtcagtaccttga 299
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 440 acccccttaacaattagccagctatccctttcagcactgatgcaactgtcagtaccttga 499

                         
Query: 300 catttacacagttg 313
           ||||||||||||||
Sbjct: 500 catttacacagttg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)