BAC Information

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BAC

Clone NameMSMg01-265A20
Chromosome15 (Build37)
Map Location 28,741,440 - 28,741,726
singlet/doubletsinglet
Overlap genenone
Upstream geneTrio, LOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265A20.T7 (MSMg01no265_a20.b1)MSMg01-265A20.TJ (MSMg01no265_a20.g1)
ACCAG406426AG406427
length735762
length of high quality
(start - end)
320 (21 - 340)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no265_a20.b1 PHD_FILE: MSMg01no265_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:25 2005CHROMAT_FILE: MSMg01no265_a20.g1 PHD_FILE: MSMg01no265_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAACTGAGAAATATTGAAT
GGCTGAGAAGCACCTGAAAAAAATGTTCACATCCTTAATCATCAGGAAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAGTGGCT
AAGATCAAAAATTCAGGTAACAGCAGATGCTGGTGAGGATGTGGAGAAAG
AGGAACACTCCTCCACTGCTGGTGGGATTGCAAGCTTGTACAACTACACT
GGAAGTCAGTCTGGAGCTTCCTCAGAAAATTGGATGTAATACTACCGGAA
GATCCAGCAATATCCTCTCCTGGGCATATACCCAGAAGAATTTTTTTTTG
GCCCCCCCCCCACCTGCTCCATTATGTTCATAGCAGCCTTATTCACCCCA
GCCAGAAGCTGGAAAGAACACGGATGTCCCTTAACCTGATTCTTACAAGA
AGGCAGAACCTTGAGTTTGACCTCTCTGCTCCCTGGTCATGGTGAGTCTG
TCTTTTTCCCCCTTCGTCCCTTGCCTGGCCTGCCTCCATATCTCTGCCCA
GCCATTGTCTGTACAGTGATTCTTTATTATCAATTAAAGCTAGTTGGGGC
AGTGGCCCCCTGTATCTGAAACTGTGGCTTTGTGACCATTTTTAATACTA
TGTTTTGAATCAACCCTCCTCTCTGAATTATTCACAATAACCGTACAATC
TTTGCAGGCTCCATGCCATATTATCTGTTAAGCCT
ACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGGTGACTTCTAAAGCCCCATGT
CTGCCTACATGCCATTATGCTCCTTGCCATGAAGATAATGAACTAAACCT
CAGAAATGGTAAGCAGCCATATTTAAATGCTTTCTTTTATTAGCCTTGTC
ATGGTCATGGTGTCTCTCTACAGCAATAGAACACTGACCAGTACAGACAG
GCACAAGAATATGATCAAAATATATTTTGAATAAAAATGTTCATCCTTCC
ATATATGAGAACATCTGATTAGTTTTAGTTGAGAGTGTAGAGATTGGTTC
AACATGGTACAAACTTCNNTTCANTACCATTAACTTTTCCGTTTCAGTAA
TTGTTTCCAGAAAAAGTCATTCCCGCACAGTCAAAAACTAATACAAGCAT
CAAAATGTGCAGTAACTATTGCAATATTTTTTTAACTAAATGATTTTACT
AGTTCCAAGTAAATGCAGGATGTTAAAAATTTTATGAAAGGAAGATGCTA
GATTCACATATTCATGGCATTAAAAACTGTCCTGAGAAGTCTTCGGATAA
AAGCATTCAATTATCCCCTTGCAAAAGAGTTTCTAACACAGAGGATATCC
AGAAAATATGCACATGGTTGAGTCTTCATTGTGAACATCTCAATAAGGAA
TTCAGGATCTGTTGTTCCTTCACTTCATGATTACCCTAAATAATTTAAAT
TATTTTAGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_a20.g1 MSMg01no265_a20.g1 CHROMAT_FILE:
MSMg01no265_a20.g1 PHD_FILE: MSMg01no265_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:25 2005
         (288 letters)



>mm_chr15_28741071_28741757
          Length = 687

 Score =  485 bits (251), Expect = e-141
 Identities = 279/289 (96%), Gaps = 3/289 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggtgacttctaaagccccatgtctgcctacatgccattatgctccttgccatgaagat 60
           ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 656 ttggtgacttctaaagcaccatgtctgcctacatgccattatgctccctgccatgatgat 597

                                                                       
Query: 61  aatgaactaaacctcagaaatggtaagcagccatatttaaatgctttcttttattagcct 120
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 596 aatgaactaaacctcagaaatggtaagcagccgtatttaaatgctttcttttattagcat 537

                                                                       
Query: 121 tgtcatggtcatggtgtctctctacagcaatagaacactgaccagtacagacaggcacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgtcatggtcatggtgtctctctacagcaatagaacactgaccagtacagacaggcacaa 477

                                                                       
Query: 181 gaatatgatcaaaatatattttgaat-aaaaatgttcatccttccatatatgagaacatc 239
           |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 476 gaatatgatcaaaatatattttgaataaaaaattttcatccttccatatatgagaacatc 417

                                                            
Query: 240 tgattagttttagttgagagtgtagagattggttcaacatggtacaaac 288
           |||||||  ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgattag--ttatttgagagtgtagagattggttcaacatggtacaaac 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space:   189162
Effective search space used:   189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)