Query= MSMg01no266_n05.b1 MSMg01no266_n05.b1 CHROMAT_FILE:
MSMg01no266_n05.b1 PHD_FILE: MSMg01no266_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:43 2005
(234 letters)
>mm_chr15_53286889_53287521
Length = 633
Score = 429 bits (222), Expect = e-125
Identities = 231/234 (98%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 1 accacaacagatcgatagtttcttttctcagatgctttttactgctaatctgtaattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accacaacagatcgatagtttcttttctcagatgctttttactgctaatctgtaattttg 260
Query: 61 ttacgatattgatcttttctaaaatttcttgtaaagctatttaacttagcgcctaataat 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tta-gatattgatcttttctaaaatttcttgtaaagctatttaacttagcgcctaataat 319
Query: 121 attaagtagccggattaactagaactacagtagtgtgattcagtggtgcaagagtttcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attaagtagccggattaactagaactacagtagtgtgattcagtggtgcaagagtttcgg 379
Query: 181 tagaattagtttcataatattggagctgccttggtttttcagcagactggtttc 234
|||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagaattagtttcagaacattggagctgccttggtttttcagcagactggtttc 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 633
Length adjustment: 9
Effective length of query: 225
Effective length of database: 624
Effective search space: 140400
Effective search space used: 140400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no266_n05.g1 MSMg01no266_n05.g1 CHROMAT_FILE:
MSMg01no266_n05.g1 PHD_FILE: MSMg01no266_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:43 2005
(287 letters)
>mm_chr15_53431038_53431724
Length = 687
Score = 532 bits (275), Expect = e-155
Identities = 284/287 (98%)
Strand = Plus / Minus
Query: 1 cttgccaaaattaaatataacttgttgagaatgttaggtagttctttgttaatgccactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cttgccaaaattaaatataacttgttgagaatgttaggtagttctttgttaatgccactt 348
Query: 61 cttgataattaacaaggctacactattcctcccctgttaaaaaataaaatgtgtttaaaa 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 347 cttgataattaacaaggctacactattcctcctctgttaaaaaataaaatgtgtttaaaa 288
Query: 121 aaataagttgaggcagatttataatagaccttcatacacatgacatagaaaggggcaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aaataagttgaggcagatttataatagaccttcatacacatgacatagaaaggggcaaaa 228
Query: 181 atgaaatagctgggtttgtatagtgggtgtcttagtcagggtttctattcctgcacaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 atgaaatagctgggtttgtatagtgggtgtcttagtcagggtttctattcctgcacaaac 168
Query: 241 atcatgaccattaaacaagttggggaggaaagggtttattcggctta 287
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 167 atcatgaccaagaaacaagttggggaggaaagggtttattcggctta 121
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
