BAC Information

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BAC

Clone NameMSMg01-267A18
Chromosome15 (Build37)
Map Location 15,680,951 - 15,681,242
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040024, LOC100040033, LOC100040046
Downstream geneEG239341, LOC100040087, LOC624183, LOC100040119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267A18.T7 (MSMg01no267_a18.b1)MSMg01-267A18.TJ (MSMg01no267_a18.g1)
ACCAG407874AG407875
length729738
length of high quality
(start - end)		320 (46 - 365)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no267_a18.b1 PHD_FILE: MSMg01no267_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:00 2005CHROMAT_FILE: MSMg01no267_a18.g1 PHD_FILE: MSMg01no267_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAAATTAGTTTTGATATGGCATTTCCTTGATGGATCAGGATGTT
GATAATGTCTATAAGTGTTTCTCAGTCATTTCCTATTCCTCTAGAGAGAA
TTCTCTGTTTAGATTTGCCTGTGGCCCCCATGTTTTAATTTAATTATTTT
GTCTATTGATATCTAGTTTATTATTTATTGGTTATTTTGTTTATTTACAT
TTCAAATAGTATCTCCCTTCCAATTTTCCTCTCCCAGAATTCCTCCTGTC
AAAAGGAAACACAGGGACAAACAGTAGATATCTAGTTTCTTGAGTTCCTT
ATATATTTTTATTATCTTTTTTCCTCCCACCCCAGTTGATGAAAATCTTG
TCCAATACTCTAGGCTATTGGTTTATCAAATGGATGGTTTCCTTGGCTAA
CAGAATCTTTTCAGGTTTATTTCAGTGTCATGTAGGTTCCATTTATTAAT
TGCTAAGTTTAGTGCCTGCACTATCATGTTCAGTTCATAAAATCATCTCC
TATGCCAATGTGTTCGAGGGTGTTTTCCCATTTATTTTCAATTGGGTTCA
GTGTGTCTGTATTAAAGTTTGATCCTCCTGGACTTGTGTTTTCTGCAGGA
TAATAATGATGCGTCAGTTTGCACTGTTTTTCATATAGATAACCAGTTTT
ACCAGCACCATTTGCTGAAAATGCTGTTN

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGGAAGAAGGACAGATGGGAG
TGATAGAGATTCACTGCTCTCATATCAGGTTCTAAAAATTATTTAAAGAC
AACAATATTAATATTGATAAAATAGTTTTCATACTTACATAAGATACAAA
TATCATTGAAGAAATATTAATTTTCCAAAGCCTTCAATGCAAACACACAC
TATGGAGTATAAAAGTTTTAAAACAAGAAAGAAAATGTTATCTGCTGTAT
TTTTACTAATAAACTGAACAATCTTTAAAAATGATTCCCTTCTTTCTAGA
CTCTAACCTTTGCCTATTTCCCTCTATCGCCCCCACGAAAGAAAAAAAAA
GAAATTTAGCATACTTTGCATTGACATGAACAACATTATATTTTGTAGTT
GCCCATGCATTAAAGCACCAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGANG
ANGAAGANGAAGAAAGGAAGGGGNTGGNGGNGGGCCCAGNGACAAATACA
AGCACTTTGTTCTCAATTTGCAAATGATTGAATATCTTTCTATCACTTCC
TTAATCTTAAATTATTTACATTTCACTAGACAAATATCTGTGCATGACAG
AAAAAAAATTAGTACCATTTTGGTAACTCAATTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_a18.g1 MSMg01no267_a18.g1 CHROMAT_FILE:
MSMg01no267_a18.g1 PHD_FILE: MSMg01no267_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:00 2005
         (292 letters)



>mm_chr15_15680751_15681442
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagggaagaaggacagatgggagtgatagagattcactgctctcatatcaggttctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tcagggaagaaggacagatgggagtgatagagattcactgctctcatatcaggttctaaa 433

                                                                       
Query: 61  aattatttaaagacaacaatattaatattgataaaatagttttcatacttacataagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aattatttaaagacaacaatattaatattgataaaatagttttcatacttacataagata 373

                                                                       
Query: 121 caaatatcattgaagaaatattaattttccaaagccttcaatgcaaacacacactatgga 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 372 caaatatcattgaagaaatattaattttcaaaagccttcaatgcaaacacacactatggg 313

                                                                       
Query: 181 gtataaaagttttaaaacaagaaagaaaatgttatctgctgtatttttactaataaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtataaaagttttaaaacaagaaagaaaatgttatctgctgtatttttactaataaactg 253

                                                               
Query: 241 aacaatctttaaaaatgattcccttctttctagactctaacctttgcctatt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aacaatctttaaaaatgattcccttctttctagactctaacctttgcctatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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