BAC Information

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BAC

Clone NameMSMg01-267J03
Chromosome15 (Build37)
Map Location 86,486,209 - 86,486,498
singlet/doubletsinglet
Overlap genenone
Upstream genePpara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300, Tbc1d22a
Downstream geneLOC100042309, AW049604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267J03.T7 (MSMg01no267_j03.b1)MSMg01-267J03.TJ (MSMg01no267_j03.g1)
ACCAG408253AG408254
length886730
length of high quality
(start - end)
---290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no267_j03.b1 PHD_FILE: MSMg01no267_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:40 2005CHROMAT_FILE: MSMg01no267_j03.g1 PHD_FILE: MSMg01no267_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCCCCCTNTTCCNCCNNTTCGAGACTCCCCCCCCTCATCCCCCCACCC
TCCCCCCCCCGCTCCGGCCCCCCGCCCCCCCCCTTCCCCCCCCCGCCGCC
GCCGCGCNCNTTCCNCCCCCCNNNNNNNNNNNAAGTGAGGGGGGGGTTCC
NAGGCCAGGCCCAGGNNNGGGGGGCGGGGAGCCCCCGCCACGCCCGTCCN
CCCCCCTCACGCCTCGGGCACAGGCGCCCGGCCCCCCCCCCTCTCTCGCC
GGCGCAAGACCGGTCCCTCNNCCACTCACCCCGGGGCCGCGGGGGGGGGG
CGGCGGCCCGAGGGGGACAGCAGGGACGCGCTNNCGCCCNNAAGGGGGGG
GGGGGGAGGAGGGACGGCGNTNTCCCCCCTCCAGCGACCGCGCGGNNNNN
NCCCAGCCACCAGGGTCCCGCGNCGAGNNCCGCGCGTGCAGGCGGGGGTT
ATCTCCCTNCGCGCCCCCGNAGGGAGGGGAGAGGGGGGAGGAAGACGGGN
NCCNCCNTTCACCAGGGGGGGGGCAGGGAGAGGGGAGAGGNTANNNTACN
CGCGGCTGGCCNCCCCNAGAGGGCNNNNNCCCCAGGGCCCNCCTCGCGAC
GCAGGGCGGACCACACACCCCCCGCGGCNTCCCCCCCCGCCCCCGNNGGG
NNNNCNGGGGNNNGNNNTCCCGCCGAAAGCCCGCCCCCCCCCCGCCGCGN
CCCCGGGGNNNNTNNNNNNNTGGGGTGCCGCCGGCGAGCGCCCCATCTCG
TTTNCTTTNTCCCCCTCTTCCCTTCCCCGCNNTCCCCCCTTCCCCGCCCC
CCCCCCTCCCTCGGNNNGGNTTCNNTGTTGTTATCTCCCCTCTCCCGGCG
GCCCGCTCCCCCCCTGTGAGCGGGTCCCTCGCCCTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATTTACTGAATACCAAAATCATGG
GTATTCACACATCCATTCATAGCCTTCTCCATGGAAAACGGGTCTCAGTT
TCTCCCCTTCAAGCAAATAGCCTGCATGTTTAGCAATTCTGGCTTTCCTA
GTACTATCTGTATGATTCCTGCCATCTACAATACATAGTTACAGGTATAC
ACTCAGAGAAAGAAAAAAAACAATAAAATGGACAAGAATGGAGATCTAGA
GTGATAATGGAGCCTGTCAAGAGGTCAAACCTGCAGGGAAGAAAGGGGGA
TGGAGAGAGAGAGATTGTGATAGAGACCACACCCCCACAGAGAGAGAGAG
AGAGAGAATTTAAACAAGTAATGGTTGAAATGAAAAAAAATTTGGGGGCC
AGATGCATGCAAAGCAAGTGTAGGATGCACAGAAATCTTCAATCAAATTC
AGCTGGAGAGAAGTTCACTCACAAAAACATAAAATCAAAGACAAAACTTC
TAAAGAGCCAAAATATATAGAGAGCATTACATAGAAGGTCTCATTGATAA
CTTGAACACAGGTAGATTTCTCAGCAGGAACCCTATATGACGTAACCTAA
CGATAACCTAAGGTATTCAAAATGATCAGGAGAAAAGCTACCAACCAAGA
ACACTTTGCCTAGCAAGGCTATTTTTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_j03.g1 MSMg01no267_j03.g1 CHROMAT_FILE:
MSMg01no267_j03.g1 PHD_FILE: MSMg01no267_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:40 2005
         (290 letters)



>mm_chr15_86485873_86486563
          Length = 691

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%), Gaps = 1/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttactgaataccaaaatcatgggtattcacacatccattcatagccttctccatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 catttactgaataccaaaatcatgggtattcacacatccattcatagccttctccatgga 567

                                                                       
Query: 61  aaacgggtctcagtttctccccttcaagcaaatagcctgcatgtttagcaattctggctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaacgggtctcagtttctccccttcaagcaaatagcctgcatgtttagcaattctggctt 507

                                                                       
Query: 121 tcctagtactatctgtatgattcctgccatctacaataca-tagttacaggtatacactc 179
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 506 tcctagtactatctgtatgattcctgccatctacaatacattagttacaggtatacactc 447

                                                                       
Query: 180 agagaaagaaaaaaaacaataaaatggacaagaatggagatctagagtgataatggagcc 239
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agagaaagaaaaaacacaataaaatggacaagaatggagatctagagtgataatggagcc 387

                                                             
Query: 240 tgtcaagaggtcaaacctgcagggaagaaagggggatggagagagagaga 289
           |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 386 tgtcaagaggtcaaacctgcagggaagaaagggggatggagaaagagaga 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space:   191642
Effective search space used:   191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)