TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAGGATGACTGTTTTCCATCTTGCCCTACAGATCTTTGAGGTCT
AGCCCATCTGGCCCCAGTGGACCAGCGGTGGCTGAACACATGGGTCATCA
GCCTTACCTAGGAAGCCATAAAACAGACTCCTTCCCAAAGGATGGGTTAG
GCTTTAGAACTAGCACTAGCCGGCAGAGGTGACTCCACCAAAGCCACATG
AGCAGAGGAAAAGTTCTAGAGCCCAAACCCTTGCAGTATGTCCTGTGCTA
GCACAACTATGCAACCAACCATCTTTCCACTCAGGGTCAGCTAGGGCTCT
ATCTCCAGTGCTATTGGACAGATACCGTATATACAGAGTCCTCCCTGCCA
AGCTCCTAGCTGTTCCCTGCCCCCAACAGTTGAAAGCCCTCCTCTATCAG
AGGCAAGATCGGGCCTCAGCATTCAGTCTCACCCCATAGAGAGCCTAGGC
CTTCTAAAGACATTTTTATTTGTCTGAAGACATTTTACCTTGGAAGTTGG
CTTCCTGCACTACAGGACAGCTGCCTTAAGAGGAAGACTCGAGGCAACCA
GATTGGGTGGGGGTTTTGGGGGAGGGNNNNNNNNNNNNNCGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNTNTNNGNNNNNNNNN
NGNNNNNNNNNNNNNNNNNNNNN

CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGCACTTCCTACTCAGGTATTAT
TTATTCTTTCTCGGATCTCTGATGGGGTTGAAGACTAGATAGTTAAAGTC
TCATAATTAAGCTTAAATTGTTTAAGATTTAAGAAGATGGTTTTAGGGGC
TGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTC
CAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCTGAGAT
CTGATACCCTTTTCTGGTGCATCTGAAGACAGCTACAGTGTACTTACATA
TAATAAATAAATTTTTTTTTAAAACCCCCCCACCAAGATGGTTTTAGATC
TTAGAAGATATTTTAGGTTTATAATGCTAGTTAGGATAAAAACTGATTTA
GATGTAGAACTCTTAAACTCACCAAGATAGGATACATAACAAAATACTTT
CTTCTGAGTTGCCAAATACAAACATACTGGATAACTTGAATGTAATTCTT
ACCTAATAACTTTCATAATTGTCTTATACTTGCTTCTACTGTGTGTTGTT
TATTATTATAAGAGAAAGAGCTTTTTTATTTGGACAAAAAGAGGGAATTT
TTGAGGTTTGGTCTGTTGCTATGTATTGTAATGATAAATACTGGCTCCCA
AGATCTATTTGCCTCAGGGATAA

Query= MSMg01no268_f08.b1 MSMg01no268_f08.b1 CHROMAT_FILE:
MSMg01no268_f08.b1 PHD_FILE: MSMg01no268_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:36 2005
         (582 letters)



>mm_chr15_61911464_61912444
          Length = 981

 Score =  959 bits (496), Expect = 0.0
 Identities = 567/616 (92%), Gaps = 40/616 (6%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaggatgactgttttccatcttgccctacagatctttgaggtctagcccatct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 gaattcaaaggatgactgttttccatcttgccctacagatctttgaggtctagcccatct 845

                                                                       
Query: 65  ggccccagtggaccagcggtggctg----------------------------------- 89
           ||||||||||||  || ||||||||                                   
Sbjct: 844 ggccccagtggataagtggtggctgaacactggaccacttccacaagtggctcacatcag 785

                                                                       
Query: 90  ----aacacatgggtcatcagccttacctaggaagccataaaacagactccttcccaaag 145
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 cactaacacatgggtcatcagccttacctaggaagccataaaacagactccttcccaaag 725

                                                                       
Query: 146 gatgggttaggctttagaactagcactagccggcagaggtgactccaccaaagccacatg 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gatgggttaggctttagaactagcactagccggcagaggtgactccaccaaagccacatg 665

                                                                       
Query: 206 agcagaggaaaagttctagagcccaaacccttgcagtatgtcctgtgctagcacaactat 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 agcagaggaaaagttctagagcccaaacccttgcagtatgtcctgtgctagcacaactat 605

                                                                       
Query: 266 gcaaccaaccatctttccactcagggtcagctagggctctatctccagtgctattggaca 325
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 604 gcaaccaaccatctttccactcagggtcagctagggctctatctccagtgctaccggaca 545

                                                                       
Query: 326 gataccgtatatacagagtcctccctgccaagctcctagctgttccctgcccccaacagt 385
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gatacagtatatacagagtcctccctgccaagctcctagctgttccctgcccccaacagt 485

                                                                       
Query: 386 tgaaagccctcctctatcagaggcaagatcgggcctcagcattcagtctcaccccataga 445
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 484 tgaaagccctcctctatcagaggccagatcgggcctcagcattcagtctcaccccataga 425

                                                                       
Query: 446 gagcctaggccttctaaagacatttttatttgtctgaagacattttaccttggaagttgg 505
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 424 gagcctaggccttctaaagacatttttatttgtctaaagacattttaccttgggagttgg 365

                                                                       
Query: 506 cttcctgcactacaggacagctgccttaagaggaagactcgaggcaaccagattgggtgg 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cttcctgcactacaggacagctgccttaagaggaagactcgaggcaaccagattgggtgg 305

                           
Query: 566 gggttttgggggaggg 581
           |||||| |||||||||
Sbjct: 304 gggttt-gggggaggg 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 981
Length adjustment: 10
Effective length of query: 572
Effective length of database: 971
Effective search space:   555412
Effective search space used:   555412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)