BAC Information

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BAC

Clone NameMSMg01-270M12
Chromosome15 (Build37)
Map Location 85,861,560 - 85,861,865
singlet/doubletsinglet
Overlap geneCelsr1
Upstream gene3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu
Downstream geneBC021523, Cerk, LOC100042300, Tbc1d22a, LOC100042309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270M12.T7 (MSMg01no270_m12.b1)MSMg01-270M12.TJ (MSMg01no270_m12.g1)
ACCAG410519AG410520
length732741
length of high quality
(start - end)
318 (39 - 356)306 (424 - 729)
definitionCHROMAT_FILE: MSMg01no270_m12.b1 PHD_FILE: MSMg01no270_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:31 2005CHROMAT_FILE: MSMg01no270_m12.g1 PHD_FILE: MSMg01no270_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
GTTGTTCATAACTCATTACATCCCAGCCAGGCATGGTGGCATGTGCCTGT
AATGCCAGCACTTGGGAGGCCAAAGCAAGAAGTTTGCTGCAAGTTTGAGG
CTAGCCTGGGCTGCATAATGAGTTTCAGATCAGTCTGGGTTACAACATGA
GACGCTGAGTGAATGAACGGAAGTATTCAGTCTCCAGTTTTGTGGCAGCA
GAAAAGCGCACTGAGACACCGGGTCAGCGGCTCTCAGCCTTCCTGGTGCC
TCCATCCTTTAATACAATACCTCACAGGGTGACCCGACCATAAAGTTCTT
ATAGTTTCTCTTAACTCCCCCCCCCCGCTACTGTTATGAATCATAATGTA
AATATCTGTGTTTTCCTATGGACTTAAGCCACCCCTATGAAAGGGCCATT
TGACCCTGATGGGTTGAGGACTACTGCACTAAGTGGAAGTAAGACAGAGA
GGCCACTTAGTGGGACTGGAAGTGTAACCTCATGGTGAGGCATTTCTCTC
ATATGTGCAGGCTCGTTCTGTTCCCAGCANGGAGATGTGGCATATGATTC
TACTTTAGGACAAATCTAGAATGGGCAACGCCAGACAGAAATGAGGTTAG
TGGTTCCCAGGGCAGGTGCAGGGCAGGGTGCAGAGTGGTGTCTTGGGGGT
ACAGGAATCCTTTACAGGAAATTGAGCTTTTC
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCACTGACGCACTGAGGGGATTCGGGCTGCC
CCGATCCCATCGAGCGCCCAAAGGTTGTACACGGCCACATTCTCTCTGTC
CAGCCGGCGCTGGGTACGGATCACACCAGACGTGGGCTCAATGTAGAAAT
CTCCATCTCCATCATCCCCACCCTGGAAAGTGTACAGGAGGCGGCCATTA
GGGCCTGAGTCACGGTCTGTAGCAGAGACCTGGAGGACACTGGTAGATGG
GGGGGCATCCTCGAAAACAGAACCCTGGTAGAAATCTCGCAGGAACCTGG
TTTTTGTTGTCATTGGCCTCCAGGATAAGGATCTCCAGAGAGGTAGTGTC
TGACTTCTGAGGAATGCCATTGTCCTGAGCCGTGATGGCCAGCGTGTAGG
CAGCCTGGTCCTCATAGTCCAGTTCCGTCATGGTATAGATGGTGCCAGTG
TCCGGGTCAATGCGGAACTGTGGTACGGGATCCTCTAGCACATAGGTGAT
GCGGGCGTTCTCACCCGTATCCTCATCCGTGGCACTGATGGTAGCGATGG
AGGTGCCCACGGGCCGGTCTTCACTCACACTGACCGTGTAGTGGGAACTC
TGGAAGACCGGCCTGTGGGTGTTGGCATCTGTAACGTTGATAAAGACCTG
CGCGGTGTGTGAACGCGTGCCATCGGACGCGGTCACAGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_m12.g1 MSMg01no270_m12.g1 CHROMAT_FILE:
MSMg01no270_m12.g1 PHD_FILE: MSMg01no270_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:31 2005
         (306 letters)



>mm_chr15_85861360_85862065
          Length = 706

 Score =  592 bits (306), Expect = e-173
 Identities = 306/306 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgagccgtgatggccagcgtgtaggcagcctggtcctcatagtccagttccgtcatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgagccgtgatggccagcgtgtaggcagcctggtcctcatagtccagttccgtcatgg 260

                                                                       
Query: 61  tatagatggtgccagtgtccgggtcaatgcggaactgtggtacgggatcctctagcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatagatggtgccagtgtccgggtcaatgcggaactgtggtacgggatcctctagcacat 320

                                                                       
Query: 121 aggtgatgcgggcgttctcacccgtatcctcatccgtggcactgatggtagcgatggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtgatgcgggcgttctcacccgtatcctcatccgtggcactgatggtagcgatggagg 380

                                                                       
Query: 181 tgcccacgggccggtcttcactcacactgaccgtgtagtgggaactctggaagaccggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcccacgggccggtcttcactcacactgaccgtgtagtgggaactctggaagaccggcc 440

                                                                       
Query: 241 tgtgggtgttggcatctgtaacgttgataaagacctgcgcggtgtgtgaacgcgtgccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgggtgttggcatctgtaacgttgataaagacctgcgcggtgtgtgaacgcgtgccat 500

                 
Query: 301 cggacg 306
           ||||||
Sbjct: 501 cggacg 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)